Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0548 ATGGCAGGCCAGTGCTCTAATGATGGGCCCAGTGCTAGCAATATTTCAGCAGAATGTTCTGATTCAACTGTTCACCTCAATATCAAGACTTTAGATTCCCGCATCTACAGTTTTCAAGTGGACAAAAATATGCCAGTTCCATTGTTGAAGGAAAAAATAGCAAATGAAGTTGGCATTCCAGTTGGTCAGCAACGGCTAATATTCAGGGGCAAAGTCTTAAAAGATGATCATGCTCTCTCTGAGTATCATGTTGAGAATGGGGATACATTGCATTTAGTTGAAAGGCAACTAAACCAGTCACAGGCTCCTGTTACCAGTTCTGGCGAGACAACTGGTACAAATGGTAACCGAGGTTCTGGGGCACCTCGTAACCGTGTCGGGCAAATTTCACATAGTGTTGTTTTGGGGACCTTTAATGTGGGCGACCAAAGTGAAGGCATTGTTCCTGACCTTAGTCGGGTTATTGGGGCAGTTTTAAACTCTATTGGAATCGGTGGGCAGGGCACTAGTGGTGTTACAAATGTTATGCAGTCTTCCTCTACAAGTCCCTCTGGGAATGAAGCTGAAGGAATGCATGTTGGAAATCAGAACCAAGCAGGAAATCAAGCACAGTCTGGACAGACGTTTTCCAGCCAACCATTCCAATCTTTGCCTCAAGGAGTCCAATCTTTGCCTCAAGTAGTCCAGATTCCTCTTGCTGCAGGATCCATATCCATTCCATCACTCAGTGCACCAATTCCTCATTCGTTGGATACTCTGTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACAAAATGGTTATCAACCAAATCTGGCAACTAATGCTGGAGAGCAAACACAAGTGGAGTTACCTTCTAACCCACAAGGGTTGCCAACAGTTGAAGCATTAAGCACTGTCTTGCATCGTGCAGAACAACTGCTTAGTGGTCATGCCGTTGCTGCACTATCTCATATTGCAGGACGCTTGGAGGGAGAAGGAACCACTTCCGATCCAAGTATAAGGGGTCAAATACACTCCGAGGCAATGCAAATAGGACTGGCCATGCAGCATTTGGGTGCATTTCTACTTGAGCTTGGGCGTACAATCTTGACACTGCGATTGGGACAGTCTTCTGCTGAATCTGTTGTGAATGCTGGGCCTGCAGTTTATATTTCTCCATCAGGACCTAATCCTATAATGGTGCAGCCTTTCCCACTTCAGACAAGCTCCCTCTTTAGTGGTTCTGTTCCTTCAACTCCTGCAACATTTGGCACAGTTGGTGTTGGAAATGCCCCTCGGAATGTAAACATCCATATACATGCCGGTACCTCTCTTGCTCCAATTGTTTCGGCAATTGGTTCTAGGCCTAACAATGGAGAAGGGACACCAAACGAACGTCGTAATGCCCCAGGCTCTAGTGATATAGGTTCAACACGTGTTTTACCTGTGAGAAATATCATTGCAGCATCTGTACCAGCACGCCCTCCCAGTGTTGGGAGCGGTAGCAGCACACAGCCTGATCTCGGTGTTTCTACTTCACAGCCACCTGATTCAGTTTCATTATCATCTGTTTTAGCTGAAGTCAATTCTCGCATTAGAAATCTTGTTGGAAATACACAAGGAGATAACACAGTTGTGTCAGGTCAAATGGAGTCAAACACCCAGGTCTTTTCTGTTGGTTCTGAATCACGGCCTACTCCAGGAAATGAACAGCTAGATACCATGGAGGCCAATGGTGTTGGGGCTGCCAGTGTGTCTTCAGTTGTTTGCTCATCTGGAAGTGAAGTAAATAAGACCCATCCTGAGGCATTGCAAACTCCTAACAATGAGGAGAGAGATGCTTTGAGCAACAAATTTGTTTCAACTTCTTCCAGTCAAGATTCATTAGGGAAGTCAGATAATGCACAAGAAAGTGCTCAATCTGTTGGTGAAAAACGTCATGTAACTGAAAGTGCCGATGCTGTTCCACTTGGATTGGGCATGAGTGGTTTGGAGCGTAAGCGGAGAACAAGGTTAAGTAAAGGTGCTGATGATGAATCAGCGAGTTCTTCAGGTAATCAAAATCAGCAAGCTGGAACAAGTGGTCAACATTTATTGGAAGCTCTTACAAGTCATGGAACTTCTTCGAATCAGAGAAATGCTAATGGGCCATCCCAAGGGCACGCTTCCCCTGGTGATGGCCAGATAGATGTGTCCGGTGTTATGTCTCAGGTTTTGCATAGCCCTGCTTTGAATGGTTTGCTGGCAGGGGTTTCACAGCAAACTGGAGTTGGCTCACCCGATGTTTTGAGGAACATGTTGCAGCAGTTCACCCAGAGCCCACAGATGAGAAACACTGTCAATCAAATTGTCCAACAGGTCGGCGGTCAGGATATGGGGAATATGTTTGGTGGAATGGAAAGAGGGCAAGGTAGCGGGATTGACTTGTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCAAGCTCTTGGTGGTGGAATTCCTTCGCCATTCTCTGCTGCAGGGACAGAGCCCCGGCCACCCAACCGAGCTGGAACAATTAGTACTCATGAAAATCAAAGTTTACAGATCAACCTTCAACCTGTGACAGAGAGGATTGGGCACTTGAGTCCGCAGGCTGATGTTTTCCGTTCTGTGGTTGAAAATGCTATCCAGTTATCTGGAAGTGGGAATTCTTCTGATGCGCATGCACTTCTGGAAGAGTTGTGCTGTGATGAGGGTCTTGCCAGTGAATATAGGGAGATATTACGACATGATGTAAGTCAGCGGCTGCAGGGTAACTCTGGGCGGGACAAAATTTAA 2790 0.4599 MAGQCSNDGPSASNISAECSDSTVHLNIKTLDSRIYSFQVDKNMPVPLLKEKIANEVGIPVGQQRLIFRGKVLKDDHALSEYHVENGDTLHLVERQLNQSQAPVTSSGETTGTNGNRGSGAPRNRVGQISHSVVLGTFNVGDQSEGIVPDLSRVIGAVLNSIGIGGQGTSGVTNVMQSSSTSPSGNEAEGMHVGNQNQAGNQAQSGQTFSSQPFQSLPQGVQSLPQVVQIPLAAGSISIPSLSAPIPHSLDTLSEFINRMEQTLSQNGYQPNLATNAGEQTQVELPSNPQGLPTVEALSTVLHRAEQLLSGHAVAALSHIAGRLEGEGTTSDPSIRGQIHSEAMQIGLAMQHLGAFLLELGRTILTLRLGQSSAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFSGSVPSTPATFGTVGVGNAPRNVNIHIHAGTSLAPIVSAIGSRPNNGEGTPNERRNAPGSSDIGSTRVLPVRNIIAASVPARPPSVGSGSSTQPDLGVSTSQPPDSVSLSSVLAEVNSRIRNLVGNTQGDNTVVSGQMESNTQVFSVGSESRPTPGNEQLDTMEANGVGAASVSSVVCSSGSEVNKTHPEALQTPNNEERDALSNKFVSTSSSQDSLGKSDNAQESAQSVGEKRHVTESADAVPLGLGMSGLERKRRTRLSKGADDESASSSGNQNQQAGTSGQHLLEALTSHGTSSNQRNANGPSQGHASPGDGQIDVSGVMSQVLHSPALNGLLAGVSQQTGVGSPDVLRNMLQQFTQSPQMRNTVNQIVQQVGGQDMGNMFGGMERGQGSGIDLSRMFQQMMPIVSQALGGGIPSPFSAAGTEPRPPNRAGTISTHENQSLQINLQPVTERIGHLSPQADVFRSVVENAIQLSGSGNSSDAHALLEELCCDEGLASEYREILRHDVSQRLQGNSGRDKI 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0548 929 SMART ubq_7 24 95 IPR000626 GO:0005515
Bisa05g0548 929 MobiDBLite consensus disorder prediction 587 637 - -
Bisa05g0548 929 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 927 - -
Bisa05g0548 929 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Bisa05g0548 929 MobiDBLite consensus disorder prediction 587 689 - -
Bisa05g0548 929 MobiDBLite consensus disorder prediction 701 717 - -
Bisa05g0548 929 MobiDBLite consensus disorder prediction 445 474 - -
Bisa05g0548 929 MobiDBLite consensus disorder prediction 491 517 - -
Bisa05g0548 929 MobiDBLite consensus disorder prediction 450 474 - -
Bisa05g0548 929 Gene3D - 12 108 - -
Bisa05g0548 929 MobiDBLite consensus disorder prediction 99 125 - -
Bisa05g0548 929 MobiDBLite consensus disorder prediction 672 689 - -
Bisa05g0548 929 CDD Ubl_ubiquitin_like 26 93 - -
Bisa05g0548 929 SUPERFAMILY Ubiquitin-like 19 97 IPR029071 -
Bisa05g0548 929 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Bisa05g0548 929 MobiDBLite consensus disorder prediction 174 216 - -
Bisa05g0548 929 MobiDBLite consensus disorder prediction 487 517 - -
Bisa05g0548 929 FunFam Large proline-rich protein BAG6 16 109 - -
Bisa05g0548 929 MobiDBLite consensus disorder prediction 701 725 - -
Bisa05g0548 929 PRINTS Ubiquitin signature 34 54 IPR019956 -
Bisa05g0548 929 PRINTS Ubiquitin signature 76 97 IPR019956 -
Bisa05g0548 929 PRINTS Ubiquitin signature 55 75 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0548 Bisa-ChrBisa05 8940297 8947874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0548 28 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.176 1.28e-10 58.2