Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0517 ATGTGTAGCGAGGGGAGCAAGATTTACCTGGCACTCGAGAGTGAAGCGGTTATGATCAATTTTCAATCTGTGTATGCAAAATTAAGCAGAGTCTTGGATGCCTTGCCTACTGAAGAATTAGACTTAACAGATGAAATGAAAGAACAGCTTGAGCTAATATGCGTCCAACTCAGGCGGGCAAAAAAGCGAAATGATACACAAGACATAGAACTTGCAATGGATATGATTGCGGTAAGCTCCAAAGATGACATTCGCAATGCTGACAGTGCAATTTATGAAAGGCTTGCACGAAAACTTGAGCTTCATACTGAGGAGGATCTTGAGATAGAAACAGTAGCTGTAAGGAACCTTGCTAAAGAAAGAAAGGGGAAAAATGCAGAGAGTACCAAGCAAATAATTGACCTTCTTAACAAATTCAAACAAATTTCAGGCATGGAAGTAACCAATGTTCTTGATGAACCTCTCATGTTAAGAACGCTTAGGAAGAGCACTTCTTTGGTCATCCCTCATGAATTTCTCTGCCCAGTAACCCTAGAAATTATGACAGATCCTGTTATTATCGCAAGCGGACAGACATACGAAAGGGAAAGCATAGAGAAGTGGTTCGAGTCGAATCGTAATACCTGCCCAAAGACTGGACAACCTCTGGATCACCTGTCGTTAGCACCAAACTATGCCCTAAAAAATTTGATTTTACTGTGGTGTGACGAAAACAACTTTAAACTTCCTAAAAAAGAAACTCCTTCAAATGAAGAAAGCTGTTTAAACGAGCCCAAAGAGGAAGTACCAAATTTGGTTAGGGACCTGTCCTCTATTCATTTAGAAGTGCAGAGAAAAGCAGTGAAAAAGATACGTATGATATCAAAGGAGAATTCTGAGAACAGGGTTTTAGTTGCAAAGCATGGAGGAATACAGCCATTGGTGCAGCTCCTGTCTTATCCAGATTCCAAAATACAGGAGCATGCAGTGACAGCCCTTTTAAATTTATCAATTAATGAGGGTAACAAGAGACTCATATCTAGAGAAGGAGCAATTCCCGCCATTATAGAAGTACTGGAGAGTGGAAGCGTTGAGGGTAAAGAAAATTCTGCAGCAGCTCTATTCAGCTTATCAATGGTGGATGAGAATAAAGAAATTGTGGGTCTATCAAATGGGATTCCCCCTTTGGTACAACTATTGCGAAATGGAACAATTAGAGGGAAAAAAGATGCAGTTACTGCTCTGTTTAATTTGTCTCTCAACCATGCAAACAAAGGTAGGGCCATTAGTGCAGGCATTGTGATGCCATTGCTTCAATTGCTCAAGAACACTAACCTGGGCATGATTGATGAGGCCCTCTCGATCCTATTACTTCTTGTGTCTAATCCAGAAGGAAGGCAGGAGATTGGACAGCTCTCTTTCATTGAAACTCTTGTTGGGTTCATGAGAGATGGAACCCCCAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGGGTTCCAATAATTCTAACCTCATGCTGGCAGCACTTCAATTTGGCGTGTATGAGCACTTGATTGAGATCGCAGAAAGTGGAACAGATAGAGCAAAGAGGAAAGCAAATGCACTTTTACAGATCATGAGCAAGACCGAGCACATTTGA 1626 0.4127 MCSEGSKIYLALESEAVMINFQSVYAKLSRVLDALPTEELDLTDEMKEQLELICVQLRRAKKRNDTQDIELAMDMIAVSSKDDIRNADSAIYERLARKLELHTEEDLEIETVAVRNLAKERKGKNAESTKQIIDLLNKFKQISGMEVTNVLDEPLMLRTLRKSTSLVIPHEFLCPVTLEIMTDPVIIASGQTYERESIEKWFESNRNTCPKTGQPLDHLSLAPNYALKNLILLWCDENNFKLPKKETPSNEESCLNEPKEEVPNLVRDLSSIHLEVQRKAVKKIRMISKENSENRVLVAKHGGIQPLVQLLSYPDSKIQEHAVTALLNLSINEGNKRLISREGAIPAIIEVLESGSVEGKENSAAALFSLSMVDENKEIVGLSNGIPPLVQLLRNGTIRGKKDAVTALFNLSLNHANKGRAISAGIVMPLLQLLKNTNLGMIDEALSILLLLVSNPEGRQEIGQLSFIETLVGFMRDGTPKNKECAASVLLELGSNNSNLMLAALQFGVYEHLIEIAESGTDRAKRKANALLQIMSKTEHI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0517 541 FunFam RING-type E3 ubiquitin transferase 168 238 - -
Bisa05g0517 541 FunFam RING-type E3 ubiquitin transferase 246 541 - -
Bisa05g0517 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Bisa05g0517 541 Pfam Armadillo/beta-catenin-like repeat 332 371 IPR000225 GO:0005515
Bisa05g0517 541 Pfam Armadillo/beta-catenin-like repeat 291 330 IPR000225 GO:0005515
Bisa05g0517 541 Pfam Armadillo/beta-catenin-like repeat 374 412 IPR000225 GO:0005515
Bisa05g0517 541 Gene3D - 245 540 IPR011989 -
Bisa05g0517 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 302 344 IPR000225 GO:0005515
Bisa05g0517 541 Pfam U-box domain 168 238 IPR003613 GO:0004842|GO:0016567
Bisa05g0517 541 ProSiteProfiles U-box domain profile. 167 241 IPR003613 GO:0004842|GO:0016567
Bisa05g0517 541 SUPERFAMILY RING/U-box 167 242 - -
Bisa05g0517 541 SUPERFAMILY ARM repeat 261 536 IPR016024 -
Bisa05g0517 541 SMART arm_5 291 331 IPR000225 GO:0005515
Bisa05g0517 541 SMART arm_5 455 495 IPR000225 GO:0005515
Bisa05g0517 541 SMART arm_5 332 372 IPR000225 GO:0005515
Bisa05g0517 541 SMART arm_5 414 454 IPR000225 GO:0005515
Bisa05g0517 541 SMART arm_5 373 413 IPR000225 GO:0005515
Bisa05g0517 541 CDD RING-Ubox_PUB 169 221 IPR045210 -
Bisa05g0517 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 242 IPR013083 -
Bisa05g0517 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
Bisa05g0517 541 SMART Ubox_2 171 234 IPR003613 GO:0004842|GO:0016567
Bisa05g0517 541 PANTHER U BOX DOMAIN-CONTAINING 2 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0517 Bisa-ChrBisa05 8475625 8478018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0517 2 541 U-box Gene Family AT5G42340 66.111 0.0 697