Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0503 ATGCAAAGAAATGCAGTCAGTGCAGATAAACCGAGTACAACGGCAATAATGCAACTGGTTTCTACAAAGGACCATTTCTGTTTCTTGCAAGTTGGGGATAGGCTGCTGGATATGATGGCTGCAAGCTGGGATGGAAGTAACGACCCTGGCAGCCAGTCAGATGATAGCTATCATTTTGACAGGCTGCACATTGAGCCTATGTATGAAACTTTTTTATGTCCTCTGACAAAGCAAGTAATGCGTGATCCTGTTACAATAGAAAATGGACATACTTTTGAACGGGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGACGTAAACCAGTTTGCCCTTTGACTCAGAAAGAACTAAAAAGCACAGAACTGAATCCCAGTATAGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAATGAGGCTGCACAGCTGGACATGGCTCGCAGGTCATTGAATATGGGGAGTCCAGAAAATGAAACTTTACAGGCTTTACATTATGTCCGACACATCTGCCAAAGAAGTCGCTCTAATAAGCATTTTGTCCGCAACACGGGGCTTATACCTGTGATTGTTGACATGTTGAAGAGCAGCAGCCGCAAAGTTCGTTGTAGAGCATTGGAAACCCTTCGAATTGTGGTGGAGGAAGACGATGAGAATAAGGAATTGTTGGTAGAAGGGGACATTGTGCGCACAATAGTAAAGTTCCTTTCTCATGAGCTCTCTAAGGAAAGGGAAGAAGCTGTATCTTTGCTTTATGAGCTCTCAAAATCTGAAACTCTGTGCGAGAAGATAGGTTCGATCAATGGGGCTATTCTTATATTAGTTGGAATGACAAGCAGCAATTCAGAAGATATTTTGACAGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAAAAATGTGAGAATAATGTGAGACAAATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAGCTACTAGAAGGCCCACCAGAAACCAAACTGTCCATGGCTGGATATCTTGGTGAGCTGGTTTTGAATAATGACATAAAGGTCCTTGTTGCTAAAACTGTGGGTTCATCCCTGATCAATTTAACGAAAAGTGGCAATATGCAGTCAAGAGAAGCTTCACTGAAAGCTCTTAATTCAATATCTTCTTGTGAGCCAAGCGCAAAGGTTTTGATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCCGCTTCCAATGCGACTAAAAGAGGTATCTGCTACAATTCTTGCCAATGTTGTGAACTCAGGAGATGATTTTGATTCTATCCCACTTGGACCTGATAACCAAACTCTGGTGTCAGAGAACATAGTTCATAATCTACTCCATCTTATTAGTAACACTGGTCCAGCTATTGAATGCAAACTTCTCCAAGTTCTTGTTGGGCTTACTAGTTCTCCAACTGCCATTCTGAGTGTTGTTTCTGCTATCAAAAGTTCTGGTGCCATTATTAGTCTTGTTCAATTCATTGAGGCTCCACAGAAAGATTTACGTGTAGCTTCTATAAAACTCCTTCAGAATCTGTCTCCCCACATGGGTCAGGAGCTAGCTGATGCACTACGTGGTTCAGTTGGACAACTTGGCAGTCTAATTAAAGTCATATCAGAAGATACAGGAATCAGTGAAGAGCAGGCAGCAGCTGTTGGCCTTCTAGCTGATCTACCTGAGAGGGATTTGGGGCTCACAAGACAGATGTTAGATGAAGGTGCCTTTCAGCTTGTCTACTCTAGAGTGATTGCAGTCAGGCGAGGGGATATCAGAGGGAGCCGCTTCGTGACACCATATCTTGAAGGGCTTGTGAAGATTCTTGCAAGGGTTACATATGTATTGGCTGATGAGCCTGATGCCATTGCATTCTGCCGTGAGCACAATCTTGCTGCACTGTTTATTGATCAGCTTCAAGCCAATGGACTCGATAATGTTCAGATGGTTTCTGCTACAGCTTTGGAGAATCTATCACAAGAAACTAAGAATTTAACAAAATTGCCTGAGATGCCATCCCCTGGTTTTTGTGCCTCAATCTTTCTGTGCCTTGGCAAACAGCCTGTCATAACAGGATTGTGTAGGCTTCACCGAGGGTTGTGTTCATTGAAAGAATCATTTTGTCTTGGGGAAGGGCAGGCAGTGCGTAAGTTAGTTGCTCTACTGGACCACACAAACGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTGTCTACTTTGTTAGATGATGGAGTTGATATTGATCAAGGGGTAATGATGCTGTTTGAGGTAGAGGGAATTAAGCCTATATTTGATGTATTACTTGAGAAACGCACAGAAAATCTGAGGAGGAGGTCAGTTTGGGCGGTTGAGAGGATATTGCGAACTGATGAAATTGCATATGAAGTTTCTGGGGATCAGAATGTGAGTACTGCACTTGTTGATGCCTTCCAGCATGGTGACTATCGAACTCGGCAGATTGCTGAGCGTGCACTCAAGCATGTGGATAAAATTCCCAACTTCTCAGGAATCTTTCCAAACAAGGGATAG 2556 0.4323 MQRNAVSADKPSTTAIMQLVSTKDHFCFLQVGDRLLDMMAASWDGSNDPGSQSDDSYHFDRLHIEPMYETFLCPLTKQVMRDPVTIENGHTFEREAIEKWFKECKESGRKPVCPLTQKELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENETLQALHYVRHICQRSRSNKHFVRNTGLIPVIVDMLKSSSRKVRCRALETLRIVVEEDDENKELLVEGDIVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSNSEDILTVEKADKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLSMAGYLGELVLNNDIKVLVAKTVGSSLINLTKSGNMQSREASLKALNSISSCEPSAKVLIEAGILSPLVNDLFAVGPNPLPMRLKEVSATILANVVNSGDDFDSIPLGPDNQTLVSENIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTAILSVVSAIKSSGAIISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVISEDTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVIAVRRGDIRGSRFVTPYLEGLVKILARVTYVLADEPDAIAFCREHNLAALFIDQLQANGLDNVQMVSATALENLSQETKNLTKLPEMPSPGFCASIFLCLGKQPVITGLCRLHRGLCSLKESFCLGEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIDQGVMMLFEVEGIKPIFDVLLEKRTENLRRRSVWAVERILRTDEIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNKG 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0503 851 SUPERFAMILY ARM repeat 492 839 IPR016024 -
Bisa05g0503 851 Coils Coil 294 314 - -
Bisa05g0503 851 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 60 847 - -
Bisa05g0503 851 ProSiteProfiles U-box domain profile. 66 145 IPR003613 GO:0004842|GO:0016567
Bisa05g0503 851 SUPERFAMILY ARM repeat 158 482 IPR016024 -
Bisa05g0503 851 Gene3D - 358 524 IPR011989 -
Bisa05g0503 851 Gene3D - 154 357 IPR011989 -
Bisa05g0503 851 CDD RING-Ubox_PUB 68 125 IPR045210 -
Bisa05g0503 851 SUPERFAMILY RING/U-box 62 148 - -
Bisa05g0503 851 Gene3D - 610 839 IPR011989 -
Bisa05g0503 851 SMART Ubox_2 70 138 IPR003613 GO:0004842|GO:0016567
Bisa05g0503 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 153 IPR013083 -
Bisa05g0503 851 Pfam U-box domain 69 143 IPR003613 GO:0004842|GO:0016567
Bisa05g0503 851 SMART arm_5 219 259 IPR000225 GO:0005515
Bisa05g0503 851 SMART arm_5 628 669 IPR000225 GO:0005515
Bisa05g0503 851 SMART arm_5 385 430 IPR000225 GO:0005515
Bisa05g0503 851 SMART arm_5 710 751 IPR000225 GO:0005515
Bisa05g0503 851 SMART arm_5 304 344 IPR000225 GO:0005515
Bisa05g0503 851 SMART arm_5 177 217 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0503 Bisa-ChrBisa05 8166251 8171236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0503 40 851 U-box Gene Family AT1G76390 64.988 0.0 1037