Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0488 ATGGCATACCCGCCGATTCAGGGTCCTAGTTCGGGATCGAGTTCAAGTTCCGGTTTTCAACTGTTCAACTCTCCTTTTGGTGATACCACTTATACCAAGGTTTTTGTTGGGGGATTGGCTTGGGAGACTCAAACTGAAACGTTGCGCCGCCACTTCGAACAGTTTGGCGACATTCTTGAAGCCGTTGTAATCAACGATAAGAATACTGGCCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAGGCTGCTAGGAGAGCATGTGCCGATCCAACTCCTATAATTGATGGTAGGAGGGCGAATTGTAATCTGGCTTCACTAGGGCGACCACGGCCTCCTCTGCCCTATGGACGATCGAGACCAACCTCCCCTTACGTAGGAAGTTTGCAACCAACCCGAGGTGCTTATGTTGGGGGTTTTGGTTACCAGCAGCCAGTTCCGTACAGCTATCATCAACAAGGATTGGTCTATCCTCCTTATGGGTATGCGACATATGGACCTGAATACATCTACCCGCAGGGTCTGTATAACCCATATATGGGTCAGCAGTACCTGCAGATATATGGAGTGCCTGGGGCAGTAAATGCTGCTATTTATCCTTATGGACAGTTGGGTCAAGCTATTCCCAGTGGTCATGGTTTTACAGCAATGCAAAGCTATGCAATGCCAGGTCATCAGATTGTGCCCCATGGTGTAACCAATGTTAATTCCATGACAACTTCGCCTATGCCTACTGTACAAGCACCATACCCTACTGGAATTGCTGCACCAGTTCCTGGGCAACCTCAATTCATTGTTCCTGCTCCTTCTCCTCAGTTTATTCAAGGTAGCGGTCCTGACCAAATAACTGGTTGA 861 0.4843 MAYPPIQGPSSGSSSSSGFQLFNSPFGDTTYTKVFVGGLAWETQTETLRRHFEQFGDILEAVVINDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYGRSRPTSPYVGSLQPTRGAYVGGFGYQQPVPYSYHQQGLVYPPYGYATYGPEYIYPQGLYNPYMGQQYLQIYGVPGAVNAAIYPYGQLGQAIPSGHGFTAMQSYAMPGHQIVPHGVTNVNSMTTSPMPTVQAPYPTGIAAPVPGQPQFIVPAPSPQFIQGSGPDQITG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0488 286 SUPERFAMILY RNA-binding domain, RBD 10 121 IPR035979 GO:0003676
Bisa05g0488 286 Gene3D - 8 120 IPR012677 -
Bisa05g0488 286 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Bisa05g0488 286 PANTHER BOULE-RELATED 10 250 - -
Bisa05g0488 286 SMART rrm1_1 33 105 IPR000504 GO:0003723
Bisa05g0488 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Bisa05g0488 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Bisa05g0488 286 CDD RRM_RBM24_RBM38_like 32 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0488 Bisa-ChrBisa05 7921377 7924700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0488 21 108 C2H2 Transcription Factor Family AT2G19380 42.045 3.24e-16 76.6