LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g0460	ATGGGTGAAGTTGTATTGAGTGGTGAGAAGGTTCTGGAAGCGAAGGAGGCAGAGGGCGAGACCCAGAAACAGAAGGGGATGACGGAGGTGGTGGAAGAAAGCGGAACAGAGAGTAAAGGTGATGAATTGAATAATGGGTTGATGAGGTGGGAGAGATTCTTGCCTAAGATGGTGTTGAGGGTGCTATTGGTTGAAGCTGATGATTCCACCCGCCAGATTATAACTGCACTTCTCAGGAAATGCAGCTACAGAGTGGCTGCTGTTCCTGATGGCTTGACGGCATGGGAAATACTGAAGGGAAGACCAGAAGATATTGATCTTATACTGACAGAAGTTGATTTGCCATCAATATCTGGCTATGCTCTTCTCACATTAATTATGGAGCATGAAATTTGCAAGAACATTCCTGTTATAATGATGTCCTCACAAGATTCAATTAGCACAGTTTACAAATGCATGTTGACAGGTGCTGCTGACTACCTTGTCAAGCCGCTTAGGAAAAATGAGCTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCTTCAACCGCTGGTGCAAATGGACCCCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAACAATGCTCTTGGTAATCGTTCAAGCGGTGATGCTGCATGCATTCAGAGAAATAAGGAATTGATTGAGAAAGGAAGTGATGCTCAGAGCTCTTGTACAAAGCCTGAATTGGAAGCTGAAAGTGCCCTAATGGATCACAGGCATGAATCCCAATCAAAAAATGGTGAATCATACCCAATTGTGACGAAGATGCAGGATGTTGAAAAATGCATGCACTTAGGCCAGACGTTGATTATGCATGATAATTACCCTGGAGATTCAGCTCATGGCAAGTACGGTGAGCCTGAACATTTTAGGAGTCCTGATACCGATGGGGAGGGCTGTGACAATCACTATGTTCAAATTACCTCTTCAAAGGAAGCTATTGACTTGATTGGAGCATTTCAAAATCATCCGAACTGCAGTCACAAAAGTTCCTTAGTCAATTGCACAGGCAAGTTTGACTTCTCTCCACAGCTGGATCTTTCCTTGAGAAGATCTCAACCCAGCAACTTTGAGAATGAAGCCACCAAAGAAAGACATACCCTGATGCATTCTAATGCCTCAGCTTTCAAGCGGTATACTAACAGGAAAATACAAGCCTCACCTGCTGTGTTAGTTAACTGCAGCGAGCAAAATGGAGAACAGAGAACAAATTGTGAGAAGGATGTCTCCAACATTGTAGGCTATAACTCAGACAGTTCAACACCGAGTATGGGAAGGAGTATTGTGCCTCCAACTACACCACAGTTGAAAGAATCTGAACTAACGACTTCCCCCACCCAGCATTGTCATTCTCTCCCAATACCAGTAAAAGGTATAAGGTACAAGGATCTAAGCACAGCCTATGATTCTGTTCTTCCGCCTCCTGTGTTTTGTACGCAGTCAGGTCCTCCAACAATGCCGGGTCCAAACTTTGTTCCACACCTTGAACCGAACTTTCAAGTGAATGCATTTTATCAGTCAAGTACCAGAGAAAACAGTTCAGAGCAGCTTTATGAACCTCGAGGTCAAAGTGGAAACAATGCAACAAACCAGATTGTGTACATGCAGGAACACAAAGTGGAACATGTGGAGGATCGAAGACGTGTGTCCCCTTCAAATGATCAAAGTGCAGGCAGTAACAGCAATGTTGACCAGGTTGCCATTGTCAGGGCAGCTACAGAGAGCAAGAATGAAGACCTCACAAATAGCGGGATTTCTCATCGGTCTATTCAAAGAGAAGCAGCTTTAAACAAGTTCCGCTTGAAACGGAAAGAGAGATGCTTTGAAAAGAAGGTTCGGTATGAGAGTAGAAAGAAACTTGCAGAGCAGCGTCCTAGAGTGAAGGGACAATTTGTTCGTCAAGAGCAGCTATAA	1953	0.4414	MGEVVLSGEKVLEAKEAEGETQKQKGMTEVVEESGTESKGDELNNGLMRWERFLPKMVLRVLLVEADDSTRQIITALLRKCSYRVAAVPDGLTAWEILKGRPEDIDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLTGAADYLVKPLRKNELRNLWQHVWRRQSSTAGANGPQDESVAQQKVEATAENNALGNRSSGDAACIQRNKELIEKGSDAQSSCTKPELEAESALMDHRHESQSKNGESYPIVTKMQDVEKCMHLGQTLIMHDNYPGDSAHGKYGEPEHFRSPDTDGEGCDNHYVQITSSKEAIDLIGAFQNHPNCSHKSSLVNCTGKFDFSPQLDLSLRRSQPSNFENEATKERHTLMHSNASAFKRYTNRKIQASPAVLVNCSEQNGEQRTNCEKDVSNIVGYNSDSSTPSMGRSIVPPTTPQLKESELTTSPTQHCHSLPIPVKGIRYKDLSTAYDSVLPPPVFCTQSGPPTMPGPNFVPHLEPNFQVNAFYQSSTRENSSEQLYEPRGQSGNNATNQIVYMQEHKVEHVEDRRRVSPSNDQSAGSNSNVDQVAIVRAATESKNEDLTNSGISHRSIQREAALNKFRLKRKERCFEKKVRYESRKKLAEQRPRVKGQFVRQEQL	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g0460	650	SUPERFAMILY	CheY-like	59	184	IPR011006	-
	Bisa05g0460	650	CDD	psREC_PRR	61	164	-	-
	Bisa05g0460	650	ProSiteProfiles	CCT domain profile.	605	647	IPR010402	GO:0005515
	Bisa05g0460	650	ProSiteProfiles	Response regulatory domain profile.	60	178	IPR001789	GO:0000160
	Bisa05g0460	650	MobiDBLite	consensus disorder prediction	630	650	-	-
	Bisa05g0460	650	MobiDBLite	consensus disorder prediction	16	39	-	-
	Bisa05g0460	650	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	59	323	IPR045279	GO:0009736
	Bisa05g0460	650	SMART	REC_2	59	174	IPR001789	GO:0000160
	Bisa05g0460	650	MobiDBLite	consensus disorder prediction	555	577	-	-
	Bisa05g0460	650	Gene3D	-	57	287	-	-
	Bisa05g0460	650	MobiDBLite	consensus disorder prediction	16	40	-	-
	Bisa05g0460	650	Pfam	Response regulator receiver domain	61	172	IPR001789	GO:0000160
	Bisa05g0460	650	Pfam	CCT motif	605	647	IPR010402	GO:0005515
	Bisa05g0460	650	MobiDBLite	consensus disorder prediction	521	540	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g0460	Bisa-ChrBisa05	7507058	7511155	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g0460	39	649	Response Regulator Gene Family	AT5G24470	43.868	7.46e-141	420

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Pseudo ARR-B	Bisa05g0460		Response_reg	6.6e-21	CL0304