Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0453 ATGTTTCTGGTGCAAGGGAGGTTGTACATGATGCATGAAAGAAGACAAAGGGAAGGGAAGTGCATGTGTGTGGTGGTTGTGGCTTATAGAATAGTGGCTTCGTTGGTGCCGGAGCTCGCTACGTGGAGCGATTTACTCGATTGGGCGGTCAACTCTTCTACTCAAGCTCTTATATTCGCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAGCTTGTGGAGCACGGCTCACCTCAAGGATTGCTCTCTTGGTTTGCTTCATAATATGAGTGGACGCTTTTCTCGCACTATCTATGTTGGAAACCTGCCCTCAGATATAAGAGAATCAGAAATTGAAGATCTATTCTACAAGTATGGTCGAATATTGGATATTGAGCTGAAGATTCCACCTCGCCCTCCATGCTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAGGATGCAATTAGGGGTCGTGATGGCTACAACTTCGACGGTTGTCGGTTGAGGGTGGAGCTTGCGCATGGTGGTAGAGGGCCATCATCAAGTGATCGCCGTGGCTATGGTGGTGGTGGGAGCCGTTTTGGCATCTCACGCCATTCTGAATATCGAGTTGTTGTTCGCGGACTCCCATCATCTGCATCCTGGCAAGATTTAAAGGATCATATGCGGAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGGGACAGCGAAGGTACGTTTGGCATTGTTGATTACACTAATAATGACGACATGAAATATGCTATTCGGAAGCTTGATGACACTGAGTTTAAAAATCCTTGGGCAAGAGCTTATATTCGGGTGAAGAAATATGAGGGCAGTCCCTCAAGGAGCCGCAGCAGGAGCCCTGGCAGAAGCAGAAGTCCTAAAAGGATTAGAAGTAGGTCATTGGAGCGATCTGTGTCCAGATCACCATCCAGATCCAGATCAGCATCACCAATCAAATCATCTAGGCCAAGATCACCATCACAGTCCCGGTCTAGGTCTCGGTCCCGATCACAATCCGGATCGCCTCGCCAGGCACGGTCGGGCAGTGGTTGA 1047 0.4833 MFLVQGRLYMMHERRQREGKCMCVVVVAYRIVASLVPELATWSDLLDWAVNSSTQALIFALEHLGANEQWSLWSTAHLKDCSLGLLHNMSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGSRFGISRHSEYRVVVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNNDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPSRSRSRSPGRSRSPKRIRSRSLERSVSRSPSRSRSASPIKSSRPRSPSQSRSRSRSRSQSGSPRQARSGSG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0453 348 SMART rrm1_1 96 166 IPR000504 GO:0003723
Bisa05g0453 348 SMART rrm1_1 198 267 IPR000504 GO:0003723
Bisa05g0453 348 Gene3D - 87 197 IPR012677 -
Bisa05g0453 348 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 95 344 - -
Bisa05g0453 348 MobiDBLite consensus disorder prediction 273 348 - -
Bisa05g0453 348 FunFam serine/arginine-rich splicing factor SR34A-like 197 274 - -
Bisa05g0453 348 Gene3D - 198 274 IPR012677 -
Bisa05g0453 348 FunFam serine/arginine-rich splicing factor SR34A-like 90 196 - -
Bisa05g0453 348 CDD RRM1_SF2_plant_like 96 167 - -
Bisa05g0453 348 SUPERFAMILY RNA-binding domain, RBD 94 268 IPR035979 GO:0003676
Bisa05g0453 348 CDD RRM2_SF2_plant_like 197 272 - -
Bisa05g0453 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Bisa05g0453 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 170 IPR000504 GO:0003723
Bisa05g0453 348 MobiDBLite consensus disorder prediction 305 348 - -
Bisa05g0453 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 164 IPR000504 GO:0003723
Bisa05g0453 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 261 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0453 Bisa-ChrBisa05 7414408 7423474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0453 97 261 Eukaryotic Initiation Factors Gene Family AT4G34110 25.146 7.43e-08 52.0