Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0422 ATGGGGCAGGGGGAGGGGACGAAAAGAAAATCCGCGAAAATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATAACCCTTGAGGTTGAGTCCAGCGATACTATTGATAATGTGAAGGCTAAGATTCAGGACAAAGAAGGTATTCCGCCGGACCAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGTACTCTCGCCGATTACAACATCCAGAAAGAGTCAACATTACATCTTGTTCTGAGGCTTAGAGGTGGCATTATTGAGCCGTCTTTGATGGCATTGGCGAGGAAGTATAATCAGGACAAGATGATCTGTCGCAAGTGTTACGCACGTTTACACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGGCACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAG 426 0.4883 MGQGEGTKRKSAKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0422 141 ProSitePatterns Ubiquitin domain signature. 40 65 IPR019954 -
Bisa05g0422 141 Gene3D - 93 141 IPR038587 -
Bisa05g0422 141 SMART ubq_7 14 85 IPR000626 GO:0005515
Bisa05g0422 141 FunFam ubiquitin-60S ribosomal protein L40 92 141 - -
Bisa05g0422 141 Pfam Ribosomal L40e family 91 140 IPR001975 GO:0003735|GO:0005840|GO:0006412
Bisa05g0422 141 ProSiteProfiles Ubiquitin domain profile. 14 89 IPR000626 GO:0005515
Bisa05g0422 141 PANTHER UBIQUITIN 14 100 - -
Bisa05g0422 141 Gene3D - 7 92 - -
Bisa05g0422 141 SUPERFAMILY Zn-binding ribosomal proteins 89 140 IPR011332 GO:0006412
Bisa05g0422 141 PRINTS Ubiquitin signature 45 65 IPR019956 -
Bisa05g0422 141 PRINTS Ubiquitin signature 24 44 IPR019956 -
Bisa05g0422 141 PRINTS Ubiquitin signature 66 87 IPR019956 -
Bisa05g0422 141 SMART Ribosomal_L40e_3 90 141 IPR001975 GO:0003735|GO:0005840|GO:0006412
Bisa05g0422 141 SUPERFAMILY Ubiquitin-like 11 89 IPR029071 -
Bisa05g0422 141 CDD Ubl_ubiquitin 14 89 - -
Bisa05g0422 141 Pfam Ubiquitin family 16 87 IPR000626 GO:0005515
Bisa05g0422 141 FunFam Ubiquitin-60S ribosomal L40 fusion 14 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0422 Bisa-ChrBisa05 6963121 6966680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0422 14 141 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 1.05e-92 262