Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0403 ATGGCGGAGGAATCGACTGTTGTTCAAGCTTCACTTATTCCAGCATCTGAGTTAGTTTTTGTCATTGTCCTTGGTATAGTTGACGTCATTAAAGCAACCAATGAGGTTCTGATTCAGAAGGACAATTTCAGAAAATTCTCAACTTACTTGGAGAAAATATCATTTATATTAAAAGGGCTATCAAAAGAAGATACACACCATGCGGAGAGACTGAAAAATGCCCTGGATATACTAAACCAAGAAGTTAAAGTTGCTAAGCAGCTGGTTTTTGAGTGCAAATGTAAAAGTAAGATTTACCTTTTGATCAATTGCCGAAAGATTGCCAAGAACTTGGAGCGTTGTTCGAAAAATATTAGCCTAGCAGTGAGCCTCATCCCTCTCACCTCTTCGGATGTTTCGTCTGGTCTAAGTAAACAGATTGGTGAGCTATGCCAGAACATGTTGGATGCTGAGTATGAAGCAGCAGCGATAGAGGAGGAAATTCTTGAAAAATTTGAGTCAGCAATACAAGAGGGAAATGCTGATAAGTATTGTGCAAATCAGTTGCTAACTTGTATTGAAGATGCTATGGGGATCTCATCAGAGCAAGCCGCTATGAAGAGAGAATTTAAAGAGCTAAAAAGTGAAATGCGAAATGCCAAGTCAAGAAGAGATACAGCTGAAGCTCTACATATGGAGCAGATCATTGGATTGCTTGAAAAAGCTGATTCCATTACTTCAGCAGAAGAGAAGGAGAAGAAGTATTACGAAAAACGAGATTCTCTGGGAAAACGGCTATTGGACCCTCTGCAATCATTTTACTGTCCAATCTCACTCGAGGTTATGGAAGACCCTGTGGAGACATCCTCGGGCAAGACATTTGAGAGAAGTGCAATAGAGAAGTGGCTTGCAGAAGGGAAGAATAACTGTCCCTTGACCATGTTGCCTCTGAATACTTCTATATTGAGGCCTAATAAGACTCTTCGACAGTCGATTCAGGAATGGAGAGACAGGAACACCATTATTACCATTTCAACTCTTAAATCCAAGCTCCTCACAGATGATGAAGAGGAGGTGCTTCAATCTTTAAAAAATTTGCAAGAGCTCTGCATGGAAAGACAGGTGCATCGAGAATGGGTGAAAATGGAGGATTACATTGCAGTTCTTACGGGGCTCCTTGGTGCTAAAAGTCATGAAATAAGGAAGCGTGTTCTGCTCATCCTGTCTTTGCTCGCAAAGGATAATGAAGAGAACAAGGAAGACATTGCTAAAGTTGATAATACACTTGAATCAATTGTTCACTCTCTTGCTCGTCCAATTGGGGAAAGCAAGTTAGCGGTGAAGTTGCTGTTAGAATTATCAAAAAGTAATGTAGTGCGTGATCTCATAGGAAACATACAAGGAAGTATACTCCTCCTTGTGACAATGTTGAGCAGTGATGACATTGAAGCTGCAAAAAATGCACATGAGCTGCTGGAGAACCTCTCTTTCCTTGATCAAAATGTTATAGAGATGGCAAAGGCAAATTATCTGAAGCCATTGCTGCAGAACCTTTCTTCAGGATCGGAAAATATGAAGATAATCATGACCAAAACTTTATCAGAAATTGAATTGACTGACCAGAATAAATTATCATTAGTCAAAGATGGAGTGCTCCAGCCACTTCTTCAGTTGCTCTCAAATTCCAACCTGGAAATCAAGAAAGTGGCTGTGAAAGCTCTCCTGCAGCTCTCAAGCTTGCCCGAGAATGGACTCCAGATGATATGGGAGGGTTTTGCTCAACCACTATTTGAACTGCTATATCGACACAGTTTACAATCAACTGCTCTGCGTGAACAAGCAGCTGCCACAATAATGCATCTTGCCGCATCAACCACGTATCAACAAGCTAATGAAGAACAGGTTTCGTTGTTGGATTCTGAGGAAGATGTATTTAAATTTTTCTCTCTCGTTTCCTTAACAGGACCTGACATTCAAAGCAAGATTCTAAGAACTTTCCAGGCAATGTGCCATTCTCCCTCTGGTTTCACCATCAGAGAAAGGTTGAGACAGCTATCCGCTGTTCAAGTATTGGTTCATTTGTTAGAGCTCAATAACCAAACAGTGCGGGCAAATGCCATTAAGCTGTTTTATTACTTGATAGAGGACGGTGATTACAGAAACTTTTCATCACACGTAACTGAAAGATGTATCAAGGTCTTGCTTACCATCATTGAGACTTCCGATGAAGCAGAAGAGATGGTTGCTGCTATGGGTATCATATCTAGACTTCCACAGGAGCCACATGTAACTCAGTGGCTTTTAGATTCTGGGGTAGTTAAAATTATTTTGGATTGTCTTTCAGATCGACATAAACATGCCTCACACAAACGGCAAGTCATAGAGAACTCTGTCCAGGCTCTTTGCCGTTTTACTGTCTCGACAAATCTAGAGTGGCAGAAGACAGTAGCTCAAGAAGGCATCATCCCGGTCCTGGTGCAATTGCTGGTTTCTGGAACACCCTTCTCAAAGAAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGCTCACATCACTTGAGCAAGCCCATAAAGAAGCCAGGCTTATTCAAATTATGCTTGGTACCTCATGAAACCGGTTGCCCAGTGCACCTAGGCACCTGTTCAGTTGAGTCTTCATTCTGCATCTTAGAGGCTAATGCCTTGGAGCCTCTTGTGAGGATGCTTGCAGAGCCAGATATTGGAACATGTGAAGCTTCCTTGGATGCACTCTCGACATTGCTTCGTGTTGAAACACCCCAGAGTGGAAGTAAGGTACTAGCAGATGCAAATGCCATTACTCCAATGATTAGATTATTGAGTCTTCAGGCTGCCAGGTTGCAGGAAAAAACTCTAATAGCTTTAGAGAAAATCTTTCAACTTGATGAAATAAAGAATAGGTACAAGTCTTCAGCCACTATGCCCTTGGTAGATATAACGCAGAGGAGAGAAAGCCGCTTGAGAAGTCTTGCTGCCAAAGTCCTTGCTCAACTGGGTGTCCTTCATGAACAGTCTTCTTATTTTTAA 3027 0.4153 MAEESTVVQASLIPASELVFVIVLGIVDVIKATNEVLIQKDNFRKFSTYLEKISFILKGLSKEDTHHAERLKNALDILNQEVKVAKQLVFECKCKSKIYLLINCRKIAKNLERCSKNISLAVSLIPLTSSDVSSGLSKQIGELCQNMLDAEYEAAAIEEEILEKFESAIQEGNADKYCANQLLTCIEDAMGISSEQAAMKREFKELKSEMRNAKSRRDTAEALHMEQIIGLLEKADSITSAEEKEKKYYEKRDSLGKRLLDPLQSFYCPISLEVMEDPVETSSGKTFERSAIEKWLAEGKNNCPLTMLPLNTSILRPNKTLRQSIQEWRDRNTIITISTLKSKLLTDDEEEVLQSLKNLQELCMERQVHREWVKMEDYIAVLTGLLGAKSHEIRKRVLLILSLLAKDNEENKEDIAKVDNTLESIVHSLARPIGESKLAVKLLLELSKSNVVRDLIGNIQGSILLLVTMLSSDDIEAAKNAHELLENLSFLDQNVIEMAKANYLKPLLQNLSSGSENMKIIMTKTLSEIELTDQNKLSLVKDGVLQPLLQLLSNSNLEIKKVAVKALLQLSSLPENGLQMIWEGFAQPLFELLYRHSLQSTALREQAAATIMHLAASTTYQQANEEQVSLLDSEEDVFKFFSLVSLTGPDIQSKILRTFQAMCHSPSGFTIRERLRQLSAVQVLVHLLELNNQTVRANAIKLFYYLIEDGDYRNFSSHVTERCIKVLLTIIETSDEAEEMVAAMGIISRLPQEPHVTQWLLDSGVVKIILDCLSDRHKHASHKRQVIENSVQALCRFTVSTNLEWQKTVAQEGIIPVLVQLLVSGTPFSKKNAAISIKQFSESSHHLSKPIKKPGLFKLCLVPHETGCPVHLGTCSVESSFCILEANALEPLVRMLAEPDIGTCEASLDALSTLLRVETPQSGSKVLADANAITPMIRLLSLQAARLQEKTLIALEKIFQLDEIKNRYKSSATMPLVDITQRRESRLRSLAAKVLAQLGVLHEQSSYF 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0403 1008 SUPERFAMILY ARM repeat 337 430 IPR016024 -
Bisa05g0403 1008 SUPERFAMILY ARM repeat 504 858 IPR016024 -
Bisa05g0403 1008 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 1008 - -
Bisa05g0403 1008 Coils Coil 68 88 - -
Bisa05g0403 1008 CDD RING-Ubox_PUB 266 315 IPR045210 -
Bisa05g0403 1008 Gene3D - 871 1006 IPR011989 -
Bisa05g0403 1008 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Bisa05g0403 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 337 IPR013083 -
Bisa05g0403 1008 SUPERFAMILY ARM repeat 785 1002 IPR016024 -
Bisa05g0403 1008 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Bisa05g0403 1008 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 576 IPR000225 GO:0005515
Bisa05g0403 1008 SMART arm_5 920 960 IPR000225 GO:0005515
Bisa05g0403 1008 SMART arm_5 532 572 IPR000225 GO:0005515
Bisa05g0403 1008 SMART arm_5 667 708 IPR000225 GO:0005515
Bisa05g0403 1008 SMART arm_5 876 916 IPR000225 GO:0005515
Bisa05g0403 1008 SMART arm_5 802 842 IPR000225 GO:0005515
Bisa05g0403 1008 SMART arm_5 753 799 IPR000225 GO:0005515
Bisa05g0403 1008 Pfam Armadillo/beta-catenin-like repeat 883 915 IPR000225 GO:0005515
Bisa05g0403 1008 Pfam Armadillo/beta-catenin-like repeat 533 571 IPR000225 GO:0005515
Bisa05g0403 1008 Coils Coil 196 223 - -
Bisa05g0403 1008 Gene3D - 338 436 IPR011989 -
Bisa05g0403 1008 Gene3D - 437 862 IPR011989 -
Bisa05g0403 1008 SUPERFAMILY RING/U-box 252 334 - -
Bisa05g0403 1008 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0403 Bisa-ChrBisa05 6666614 6671190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0403 264 1008 U-box Gene Family AT1G76390 29.648 2.99e-69 246