LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g0309	ATGCTCGTCAAGTCCTGCTACGAAATCAACCAAACTTCGCTTTCCTTGTTTGTCTTCAACAGCTGCGACCTCACTTTCCTCAAGTCTCGTTACGAATTTCGAGGACTTTTGATTGAAAGTAATGGCATACAGAGACCAGTTTTGCTCATCATGATTCTTCGTTCCTCTTTGGATTCCCAAATTGAGATTGGGACTGTTACTACCACCGACCATGTAGCCATCGATGTTGATTCTGGAAATCAAACAGATGACCGCAATCATCACCACCAATCACACTCACTACACCAAAGAAAGGTCATGCCAACGTGGACAGAACATATTCGAGTGAGTCCAGGGATGGAAGGGCTTCCTGACGATGGATACAGTTGGACAAAAAATGGCCAGACAGACATTCTGGGAGCCAACTCTCCGAGAGGGTATTATAGATGCACCCATAGGACTGGTCAAGGATGCTTGGCCACAAAGCAAGTGCTAAGATCTGCTGAAGACCCGACGACATTCGAAATCACATACATAGGAAAGCACACCTGCATAAAGCCAGCCAATGTCGTTCCTCCATCTGGCACACAAGAAAACCAAGAACCACATCCAAGCGCTAAAGATGCTCATCAGCAGCAATCACAGGAAGAGCTACTTTCAAACCTGCAGGGTGGGCCGAGAGTCCAAACAGAGAATCTAGAAGTCCCTGAGTCAGAGAATTCCTCCAGTATGAAAGATGAAAATAGCCAAGATTTCACAAGCCCTATGATGAAGATTGATGGGACTGAAAATTACTGCTGGAGAAACATTGTGGATCTATATCATCGATAA	810	0.4519	MLVKSCYEINQTSLSLFVFNSCDLTFLKSRYEFRGLLIESNGIQRPVLLIMILRSSLDSQIEIGTVTTTDHVAIDVDSGNQTDDRNHHHQSHSLHQRKVMPTWTEHIRVSPGMEGLPDDGYSWTKNGQTDILGANSPRGYYRCTHRTGQGCLATKQVLRSAEDPTTFEITYIGKHTCIKPANVVPPSGTQENQEPHPSAKDAHQQQSQEELLSNLQGGPRVQTENLEVPESENSSSMKDENSQDFTSPMMKIDGTENYCWRNIVDLYHR	269

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g0309	269	Gene3D	WRKY domain	109	181	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa05g0309	269	SUPERFAMILY	WRKY DNA-binding domain	116	178	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa05g0309	269	ProSiteProfiles	WRKY domain profile.	112	180	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa05g0309	269	SMART	WRKY_cls	117	179	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa05g0309	269	MobiDBLite	consensus disorder prediction	182	249	-	-
	Bisa05g0309	269	MobiDBLite	consensus disorder prediction	77	97	-	-
	Bisa05g0309	269	MobiDBLite	consensus disorder prediction	183	249	-	-
	Bisa05g0309	269	Pfam	WRKY DNA -binding domain	118	177	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa05g0309	269	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	80	248	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g0309	Bisa-ChrBisa05	4867515	4870142	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g0309	76	227	WRKY Transcription Factor Family	AT4G23810	42.949	2.15e-34	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Bisa05g0309		WRKY	5.4e-22	CL0274