Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0308 ATGGATGACGGCAGCTTTTCTGAAATCTTCGAAGACGACGATTTCCTTGGCATTCTCGAAGATTTCGCCCATTGTCCTTCCATCTCCCATCAATCACTTACTCTTAGCTCAAAAGAGATCCACGACGTCGTCGAAACTTCGAGTTCAAGAACCAAGAGACAACCTGAATATTCTGAAACCGACCTTGAAACTTCCCCAAGAACCAAGAGACAGAAGCTTGGGGTGCCATCGGAGGAACCAAAGGTCTCTCATATAACTGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCATTTGTCCGTCTTGAGGTCTCTCATGCCTTGCTTTTATGTCAAACGAGGAGATCAAGCGTCAATAATAGGAGGAGTGGTTGATTACATCAACGAGTTGCAGCAGCTTCTGCAATCCCTGGAGGCCAAGAAGCAGAGAAAAGTGTATACAGAAGTTCTGAGCCCTAGGCTAGCAGTGTCGAGCCCAAGGCTCATGTCTCCTCTGAGTCCCAGAAAGCCCCCTCTAAGCCCAAGGCTAAACCTGCCCATGCCCATCAGCCCAAGGACCCCACAGCCAGTGAGCCCATACCCCTGCAGGCCACCCAGACTGCCCAGCTCTCTCGAACCATCTCCCACGTCTTCCGCTTCCTCCTCCATCAACGACAACATCAACGAGCTCGTCGCCAATTCTAGGTCAGAAATGGCTGACGTGGAGGTCAAGTTCTCTGGGCCCCACGTCGTCCTCAAAACCCTTTCTTGTCACATCCCCGGTCAAGCTCTCAAAATCATATCCGCTCTTGAAGATCTTGCGCTTGAGATCCTCCACGTCAGCATCACCACTGTTGATGACAGCATGATTAACTCATTCACCATTAAGATTGGAACTGAATGTCAACTCAGTGCCGAGGAACTGGCTCATCAAGTCCAACAAACATTCTGCCAACTCTACTAA 942 0.4989 MDDGSFSEIFEDDDFLGILEDFAHCPSISHQSLTLSSKEIHDVVETSSSRTKRQPEYSETDLETSPRTKRQKLGVPSEEPKVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQSLEAKKQRKVYTEVLSPRLAVSSPRLMSPLSPRKPPLSPRLNLPMPISPRTPQPVSPYPCRPPRLPSSLEPSPTSSASSSINDNINELVANSRSEMADVEVKFSGPHVVLKTLSCHIPGQALKIISALEDLALEILHVSITTVDDSMINSFTIKIGTECQLSAEELAHQVQQTFCQLY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0308 313 CDD bHLH_AtFAMA_like 83 153 - -
Bisa05g0308 313 Pfam Helix-loop-helix DNA-binding domain 81 131 IPR011598 GO:0046983
Bisa05g0308 313 Coils Coil 123 147 - -
Bisa05g0308 313 PANTHER TRANSCRIPTION FACTOR FAMA 11 309 IPR044283 GO:0003700|GO:0010052
Bisa05g0308 313 SMART finulus 85 136 IPR011598 GO:0046983
Bisa05g0308 313 MobiDBLite consensus disorder prediction 159 216 - -
Bisa05g0308 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 146 IPR036638 GO:0046983
Bisa05g0308 313 Gene3D - 74 144 IPR036638 GO:0046983
Bisa05g0308 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 130 IPR011598 GO:0046983
Bisa05g0308 313 MobiDBLite consensus disorder prediction 44 81 - -
Bisa05g0308 313 MobiDBLite consensus disorder prediction 164 204 - -
Bisa05g0308 313 FunFam Transcription factor SPEECHLESS 71 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0308 Bisa-ChrBisa05 4832938 4835070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0308 13 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.077 1.55e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa05g0308 HLH 3.4e-10 No_clan