Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0304 ATGGAACAGAGCATCCTATGCAAATACACTGTGCATCGCAGCGTTACCAAGAAGCACACCAAACCGGTGGCATCTAAGAAGGCCTACGATGCCCACAGTCCGATAGAGCCCAGAGTTGTACGGATATCGGTGACCGATCCAGATGCCACAGACTCCTCCAGCGACGATGAAGGAGAGTATTGTTTCTCTCGTCAGAGGGTCAAGCGCTATGTGAACGAGGTTAACATCGAAGAAAGCTGCAAGAGCGTGGCCCTTCCCAATCCCAGAAAGAGGCCCGCCGGACAAACTTCGGCTAGCCGGCGGCCGGTGAAACTTTCTACTACAAATAACGGTAGGAAGTTCCGGGGAGTGCGGCAAAGACCCTGGGGGAAATGGGCTGCTGAGATTCGAGATCCCGCGCGACGTGTCCGTGTGTGGTTAGGCACCTTCGACACAGCGGAGGAAGCTGCTATGGTGTACGACAATGCGGCGATAAAGATACGAGGACCTGACGCTTTAACAAACTTTGTGACCCCTCCACCGAGGGAGAAGGCGGAAGAAGCAGAAGTGGCAGTGAAGCCGGAAATGAACCTGACGGTGAAGTCAGAGGCGTCAGGATCCGGATACGATTCGGGCGAGGAGTCGCATCGTCTATCATCTCCCACGTCAGTGCTGCAATTCAGAAGCAATTGCAGTGAAGATACGGAACCGCAAAAGGCAAGTGAACAGGAAAAAGAGAGCGAGGAGGAGGCGGAGGCAGCGAAAGCGGGAATGGAAGAGGTATTGCGGGAGTGCGAAGGGGAAACGAGTGTGTTCGAGGAGAGTGGAGATTACTTGAGCGTTGAAATGCCAAATTGGGATGAATTATTCAATTTCTCAACGCCAGAACCAGAGTACTCGTTACTGTTTGAGGATTCCCCACAGTTTATGAGTACAACAACACCGATCATACCGGACGAAGATTTCAGAGTGGAGAACATGATTATTGGAGGAGTGTCAGAGGTGGAGTTCGAGAAATCGTACTCGCCATCGACCCTATGCCAAATGGACGATTACTTTCAAGACATATTGCTAGGTTCAGACCCCCTGGTGGTGCTGTGA 1080 0.5204 MEQSILCKYTVHRSVTKKHTKPVASKKAYDAHSPIEPRVVRISVTDPDATDSSSDDEGEYCFSRQRVKRYVNEVNIEESCKSVALPNPRKRPAGQTSASRRPVKLSTTNNGRKFRGVRQRPWGKWAAEIRDPARRVRVWLGTFDTAEEAAMVYDNAAIKIRGPDALTNFVTPPPREKAEEAEVAVKPEMNLTVKSEASGSGYDSGEESHRLSSPTSVLQFRSNCSEDTEPQKASEQEKESEEEAEAAKAGMEEVLRECEGETSVFEESGDYLSVEMPNWDELFNFSTPEPEYSLLFEDSPQFMSTTTPIIPDEDFRVENMIIGGVSEVEFEKSYSPSTLCQMDDYFQDILLGSDPLVVL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0304 359 MobiDBLite consensus disorder prediction 83 115 - -
Bisa05g0304 359 MobiDBLite consensus disorder prediction 99 114 - -
Bisa05g0304 359 MobiDBLite consensus disorder prediction 188 252 - -
Bisa05g0304 359 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Bisa05g0304 359 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Bisa05g0304 359 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Bisa05g0304 359 Coils Coil 237 261 - -
Bisa05g0304 359 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Bisa05g0304 359 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Bisa05g0304 359 CDD AP2 113 169 IPR001471 GO:0003700|GO:0006355
Bisa05g0304 359 MobiDBLite consensus disorder prediction 39 58 - -
Bisa05g0304 359 MobiDBLite consensus disorder prediction 193 227 - -
Bisa05g0304 359 Coils Coil 359 359 - -
Bisa05g0304 359 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 258 - -
Bisa05g0304 359 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Bisa05g0304 359 MobiDBLite consensus disorder prediction 228 252 - -
Bisa05g0304 359 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Bisa05g0304 359 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0304 Bisa-ChrBisa05 4728231 4729310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0304 7 358 AP2-EREBP Transcription Factor Family AT4G27950 39.503 1.76e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa05g0304 AP2 4.2e-14 CL0081