Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0293 ATGTCAAGCAATGCAATAACTCTCTTTATCTTGTTTCTTAATATCTCCTTGTTTCCATCCATCTCTGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTTACAACCTTCAATTCGTCTGATTCTGCTGCTTCCTTCTCTTCATGGAATCCAACCCACAAAAGTCCATGCGGATGGGATTATATAAAATGTTCCAAAGATGGGTTTGTTTCAGAGATCACAATAACATCTATCAATCTTCGTAGCAGCTTCCCTTCACAGCTTCTTTCTTTTGGTCACCTCACCACTCTTGTCATCTCAAATGGAAATCTTACTGGTGAGATTCCGAGTGCAGTAGGAAACTTGTCGTCTCTTGTTACTTTGGACCTCAGCTTCAATGCTTTATCAGGAACTATTCCTGCAGAAATAGGAGACTTAACTAATCTGCAGTGGTTATCATTGAATTCAAATTCTTTACAAGGTGGAATTCCAGCAGAAATCGGGAATTGTTCAAAGCTTCAGCAGCTGGAACTGTATGACAACCAGCTCTCTGGTATGATTCCTGCAGAGATAGGCATGTTAAAGGATCTTGAAACGTTTCGAGCAGGTGGAAATCAGGGTATGCATGGTGAAATTCCAATGCAGATATCAAACTGCAAAGCCCTCACTTTTCTGGGTCTTGCAGATACTGGGATCTCAGGGGAGATTCCCTCAAGTATAGGAGAACTTAAGAATCTCAAGACACTTTCAGTCTACACAGCAAACCTCACAGGTCGAATCCCACCAGAGATTCATAACTGCTCAGCCTTGGAGAATTTATTTCTGTATGAAAATAAGCTTTCTGGTCACATTCCTTATGAATTGGGTTCCATGAAAAGTCTCAGGAGGATATTGCTATGGCAGAACAATTTAACTGGAACTGTCCCAGAAAGTCTTGGAAACTGTACAAGTCTGATGGTCATAGATTTCTCTTTGAACTCTTTGGAAGGTGAGCTTCCTGTGACTCTCAGAAATTTACTGTCGTTGGACGAGTTTCTTCTCTCTGATAATAATATTTCTGGAGAAATACCTGCCTATATTGGCAACTTTTCCAGACTGAAGCAACTCGAATTAGATAACAACAGATTCTCTGGTGAGATTCCACCTGTTATGGGACAACTGAAAGAACTCACCTTGTTCTTTGCCTGGCAGAACCAGCTCCATGGAAGCATACCAACAGAACTAGCCAACTGTGAGAAACTTGAAGCAGTTGATCTTTCACACAACTTCCTCACTGGGTCAATTCCAAGTTCTCTCTTTCACCTAGAGAACTTAACTCAATTACTGTTGATATCAAACCAACTTTCAGGTCAAATTCCACCGGATATTGGCAGCTGCACCAACTTGATCAGGCTACGGCTCGGATCAAACAACTTCACTGGTCAAATTCCACCAGAAATAGGTCTTTTAAGCAGTTTGAGCTTTCTTGAATTATCAGATAATCTACTTACTGGAGAAATTCCTGACCAAATTGGTAACTGCAATCAGCTGGAAATGCTTGACTTGCACAGGAATCAGCTGCAAGGGACAATTCCTTCCTCATTTGAATTCCTGGTAGTTCTTAATGTTTTAGATCTTTCCACGAACAGAATAACTGGCAGTATTCCCCAACATTTGGCTAAGCTTACATCTCTAAATAAGCTTATACTCAGTGGAAACAATATCACTGGTTTGATCCCTCAGTCACTAGGCCTTTGTACAAATTTACAGTTGCTGGATATTAGCAACAATAAGATTGCTGGTTCCATTCCAGATGAGATTGGTCAATTGCAAGGATTAGATATTCTCTTGAACTTGAGTTGGAATTCTCTAACAGGATCAATTCCAGAGAGCTTCTCAAATCTCTCAAAACTTTCCAACTTGGACCTCTCCTACAACAAGCTTACAGGCAGCCTCAGCGTATTGGGTAGTCTTGATAATTTAGTGTCTTTGAATGTATCCTACAATAGTTTTTCTGGTACTCTTCCTGATACGAAGTTCTTTCATGATCTCCCCGCTGCTGCATTTGCTGGTAACCCTGAGCTCTGCATTGACAAGTGTGGCATGAATGGAAATCGTCAAGGCGTCAAGTCAATAAGAAATATTTTAATCTACACTTTTCTTGGTGTTCTTTTAACAGCCATGTTTGTGACTTTTGGAGTAATTCTAGCTCTCAGAGTTCAAGAGGCTAAATTTGGGAGGAAATTTGATGAAGAAAGTGAAATGGAATGGGCTTTCACTCCATTTCAGAAACTTAACTTCTCCATCAATGACATTGTCCCCAAGTTATCAGATTCAAACATTGTGGGAAAGGGTTGCTCAGGAATTGTTTATCGCGTAGAGACTCCAATGAAGCAGACAATTGCAGTGAAGAAGCTCTGGCCAATAAAGAATGATGAGCCTCCGGAGAGAGATTTGTTTTCAGCAGAAGTTCAGACCCTGGGATCAATAAGACACAAGAATATAGTCAGGCTTCTGGGATGCTGTAACAATGGAAGAACCAGATTGCTCTTGTTTGATTATATCTGCAATGGGAGTCTGCATGGTTTGCTCCATGAAAAGAGGCTGTTCTTGGACTGGGATGCAAGATACAAGATCATACTAGGAGCAGCTCATGGTTTAGAATATCTTCATCATGATTGTACCCCTCCAATCGTCCATCGAGACATTAAGGCTAACAACATATTGGTAGGACCACAATTTGAAGCTTTTCTTGCAGATTTTGGTCTAGCAAAACTTGTCAGCTCCTCTGAGTGTTCAAAAGCCTCTGCTATAGTTGCAGGCTCTTATGGCTACATAGCTCCCGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTGTACAGTTATGGTGTGGTGCTTCTGGAGATGCTGACGGGGATGGAGCCAACTGATAACAGGATTCCAGAGGGTGCTCACATAGTCACTTGGGTGAACAGGGAAATCCGAGAGAAAAAAAGAGAATTCACATCAATTCTTGACCAGCAACTATTACTACAATGTGGAACACGAACTCCAGAGATGCTTCAAGTGCTAGGGGTTTCACTCCTCTGTGTGAATCCTTCCCCAGAAGAACGACCCGCCATGAAAGACGTGACAGCAATGCTCAAGGAAATCAGAAATGAAACTGACAATTTCGATAAACAAAGTTTTCTCCACAAAGGAGGACTCGCCAATCCAAAAGTAGCAGTTCACTGTTCAAGTTTCTCCAGATCCTGTGAACCACTAATAGAATCATCATCATCTTCTTCTTCTTCTTCCTAA 3270 0.4131 MSSNAITLFILFLNISLFPSISALNQEGLSLLSWLTTFNSSDSAASFSSWNPTHKSPCGWDYIKCSKDGFVSEITITSINLRSSFPSQLLSFGHLTTLVISNGNLTGEIPSAVGNLSSLVTLDLSFNALSGTIPAEIGDLTNLQWLSLNSNSLQGGIPAEIGNCSKLQQLELYDNQLSGMIPAEIGMLKDLETFRAGGNQGMHGEIPMQISNCKALTFLGLADTGISGEIPSSIGELKNLKTLSVYTANLTGRIPPEIHNCSALENLFLYENKLSGHIPYELGSMKSLRRILLWQNNLTGTVPESLGNCTSLMVIDFSLNSLEGELPVTLRNLLSLDEFLLSDNNISGEIPAYIGNFSRLKQLELDNNRFSGEIPPVMGQLKELTLFFAWQNQLHGSIPTELANCEKLEAVDLSHNFLTGSIPSSLFHLENLTQLLLISNQLSGQIPPDIGSCTNLIRLRLGSNNFTGQIPPEIGLLSSLSFLELSDNLLTGEIPDQIGNCNQLEMLDLHRNQLQGTIPSSFEFLVVLNVLDLSTNRITGSIPQHLAKLTSLNKLILSGNNITGLIPQSLGLCTNLQLLDISNNKIAGSIPDEIGQLQGLDILLNLSWNSLTGSIPESFSNLSKLSNLDLSYNKLTGSLSVLGSLDNLVSLNVSYNSFSGTLPDTKFFHDLPAAAFAGNPELCIDKCGMNGNRQGVKSIRNILIYTFLGVLLTAMFVTFGVILALRVQEAKFGRKFDEESEMEWAFTPFQKLNFSINDIVPKLSDSNIVGKGCSGIVYRVETPMKQTIAVKKLWPIKNDEPPERDLFSAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYICNGSLHGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCTPPIVHRDIKANNILVGPQFEAFLADFGLAKLVSSSECSKASAIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEMLTGMEPTDNRIPEGAHIVTWVNREIREKKREFTSILDQQLLLQCGTRTPEMLQVLGVSLLCVNPSPEERPAMKDVTAMLKEIRNETDNFDKQSFLHKGGLANPKVAVHCSSFSRSCEPLIESSSSSSSSS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0293 1089 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Bisa05g0293 1089 SMART LRR_typ_2 429 453 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 549 572 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 357 381 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 477 501 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 525 548 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 622 644 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 573 597 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 285 309 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 116 139 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 140 164 IPR003591 -
Bisa05g0293 1089 SMART LRR_typ_2 645 678 IPR003591 -
Bisa05g0293 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Bisa05g0293 1089 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Bisa05g0293 1089 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 555 1033 - -
Bisa05g0293 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Bisa05g0293 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Bisa05g0293 1089 Gene3D Phosphorylase Kinase; domain 1 728 841 - -
Bisa05g0293 1089 Pfam Leucine Rich Repeat 604 622 IPR001611 GO:0005515
Bisa05g0293 1089 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Bisa05g0293 1089 Pfam Protein kinase domain 766 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa05g0293 1089 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Bisa05g0293 1089 Gene3D Ribonuclease Inhibitor 188 395 IPR032675 -
Bisa05g0293 1089 PRINTS Leucine-rich repeat signature 119 132 - -
Bisa05g0293 1089 PRINTS Leucine-rich repeat signature 622 635 - -
Bisa05g0293 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Bisa05g0293 1089 Gene3D Ribonuclease Inhibitor 396 690 IPR032675 -
Bisa05g0293 1089 SMART serkin_6 763 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa05g0293 1089 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Bisa05g0293 1089 SUPERFAMILY Protein kinase-like (PK-like) 746 1038 IPR011009 -
Bisa05g0293 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Bisa05g0293 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Bisa05g0293 1089 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Bisa05g0293 1089 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Bisa05g0293 1089 Gene3D Transferase(Phosphotransferase) domain 1 842 1057 - -
Bisa05g0293 1089 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Bisa05g0293 1089 SUPERFAMILY L domain-like 39 395 - -
Bisa05g0293 1089 ProSiteProfiles Protein kinase domain profile. 763 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa05g0293 1089 SUPERFAMILY RNI-like 327 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0293 Bisa-ChrBisa05 4594506 4597885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0293 23 1058 Receptor kinase-like Gene Family AT5G56040 48.436 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bisa05g0293 Pkinase 2.1e-40 CL0016