Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0235 ATGCAAGGTCAGAGGGGTACAATTGGTTCCTTGCCTGAAACCTTAGAATTTGATTGTGGCTCCTCATCAAGTAATGCTACTGTGGATCAGCAGATTTGCTGGAACAATATGCACAATCCTGCAGATAACGATATTCCTGAGTATTTACTTCCACCAAGTGATATGAACCCTTCATATGTGAATTCTATAAATCATGAGCCAAGTGGATGGAGCTTGGGTGAGCCAAGTTCTGGTAATACCCAGAGTGAGATTAACAATAATCAGCAGAAAAGAGAACTTGGATGGTCATCTCCAGTAAGTTCTGATGCTGTGGCTGGTCCAAGATTAGAAGGAAGGCCCTTTGAACCAACTATAGTTCTGTCAGCGGACAATGTCAATTCAAGTCCTATGTATATGCACAGCTCCAATTCTCATTTGTTGACACCGAATCTCAACTTAAATGCAGGTTTGCCCCAAGGTGGCAGTGAAAATAGTCAGCAATTGGAGCATCACAACTTGCACAAGTCTGGTGGATCAGTAAATGAGCGTATTCCACCTAGCATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGACATAACAGCTTCTTGGTGGAAGGTAGTGATGGTAGGTCAGGCTGTTCTCTGGATGGTCGCCGTGTGTCTTGTAAAAGAAAGGCCATTGAAGGAAATGTTGGACCATCATCAGACAGTGGAAGTTCTAGTTACAGTCAGCATATAGAAAGTAGTTCTTGGCACACTCTTCCTACTCAGGATAATGCTGGGAGCAGTTTAAGTAGATCTGCTTCATCTGAACACGTAAATGCTAGACTTGGGCTGGGTATGGGGGATGAAACCACTGAAAGCCTTCCTGATTCTAATGTTGCTGGGAGCTCAGAAGGCTTCCACAGGAATTTCCGTTTGAGGATAAATCCTTCAAGCCAACAAGATTCCATTCCTCCCTCTGCATTCTCCACTGGGAGTGTGATTAGGCATTCTAGTGTTTCATCCTCCTCAATGTCACAAAGATTTCCTCCTGTTGATAATTCCCTAGACTTGAGGTCTGCACCAGTGGTAGATAATATTATTCCTCAAAGCCAGCCCCTTGTGATCCAAGTTCCTGCTTTACCAAGGAATGTGCAGTCATTTAGATGGAATAGTGGTTCTAGCTCGAGAAACAGCCATTCATCGAGCTCAATCATTTGTGCAGATAGGGATAATCTACCACTTGAAGAAGGGAGCTCACGAAGTTTACCTAGAAACGTTTTAGAACGCCCAGTGTTTGTACCTGCAAATGATGTAAGAAATGTTGTTCGAAGCCCAACAATTAGAGCTTCAAGTAGTACAAATTTAAGCATGTCAGGAAACGTTGCATCTTCATCACGGGCTGGATCAAATTCAGCTATCAATCAATCATCTGCCTCAACGTGGGTTTCTCGTCCTAGTCCTCCACAGTACCCGCGTAGGTTATCTGAATATGTTCGTCGATCGTTGTTTTCTCCTCCTTCTGAGAGTGCTGGAAGTCCAAGTCCAAGCAACAACTATTCTTCTTTGCGCTCTGGTCCTACTGTTTCATCTGGAGTGAGGGTCCCATCATCTGGTGCCAGTGGTCAAGGACATCATCAGTCACACCCAAGATCTTCTTTGTGGATGGAGAGGCAAGGTGATACTGAATTTGGAATTCCCTTTTCATTACGAACTTTGGCTGCTGCTGGTGAAGGAAGTAGTAGTAGACTAGTATCTGAGCTCCGCAATGTTTTGGGCCTCATGCGTAGGGGTGGAGGCCTTCGATTTGAGGATGTTATGATTCTTGACCAATCTGTCTTTTCTGGAATGGCTGATCTTCATGATCGGCACAGGGATATGCGTCTTGACGTTGATAACATGTCTTATGAGGAATTATTGGCTTTGGAAGAGCGTATTGGCAATGTGAGTACTGGATTGAGCGAGGATACCATATTGAAACTTCTGAAAAAGAAGAAGTATTCAGTCGAAACAGGATATCGGTTGGAGGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTACAAGGACGATGATGACATTGGAACGCTTGATTGCGGGCATGATTTCCATACTGACTGTATCAAGCAGTGGCTAATGCATAAGAATATGTGTCCCATTTGTAAGACAACGGGCTTGGCAACGTGA 2145 0.4429 MQGQRGTIGSLPETLEFDCGSSSSNATVDQQICWNNMHNPADNDIPEYLLPPSDMNPSYVNSINHEPSGWSLGEPSSGNTQSEINNNQQKRELGWSSPVSSDAVAGPRLEGRPFEPTIVLSADNVNSSPMYMHSSNSHLLTPNLNLNAGLPQGGSENSQQLEHHNLHKSGGSVNERIPPSIGSGPFLLPSGHNSFLVEGSDGRSGCSLDGRRVSCKRKAIEGNVGPSSDSGSSSYSQHIESSSWHTLPTQDNAGSSLSRSASSEHVNARLGLGMGDETTESLPDSNVAGSSEGFHRNFRLRINPSSQQDSIPPSAFSTGSVIRHSSVSSSSMSQRFPPVDNSLDLRSAPVVDNIIPQSQPLVIQVPALPRNVQSFRWNSGSSSRNSHSSSSIICADRDNLPLEEGSSRSLPRNVLERPVFVPANDVRNVVRSPTIRASSSTNLSMSGNVASSSRAGSNSAINQSSASTWVSRPSPPQYPRRLSEYVRRSLFSPPSESAGSPSPSNNYSSLRSGPTVSSGVRVPSSGASGQGHHQSHPRSSLWMERQGDTEFGIPFSLRTLAAAGEGSSSRLVSELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADLHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEDTILKLLKKKKYSVETGYRLEAEPCCVCQEEYKDDDDIGTLDCGHDFHTDCIKQWLMHKNMCPICKTTGLAT 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0235 714 MobiDBLite consensus disorder prediction 437 474 - -
Bisa05g0235 714 SUPERFAMILY RING/U-box 666 710 - -
Bisa05g0235 714 MobiDBLite consensus disorder prediction 166 185 - -
Bisa05g0235 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 711 IPR013083 -
Bisa05g0235 714 MobiDBLite consensus disorder prediction 59 96 - -
Bisa05g0235 714 Pfam Ring finger domain 667 708 IPR001841 -
Bisa05g0235 714 FunFam E3 ubiquitin-protein ligase MBR2 635 712 - -
Bisa05g0235 714 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 211 712 IPR045191 GO:0061630
Bisa05g0235 714 MobiDBLite consensus disorder prediction 493 540 - -
Bisa05g0235 714 MobiDBLite consensus disorder prediction 490 540 - -
Bisa05g0235 714 MobiDBLite consensus disorder prediction 225 264 - -
Bisa05g0235 714 MobiDBLite consensus disorder prediction 219 264 - -
Bisa05g0235 714 MobiDBLite consensus disorder prediction 59 110 - -
Bisa05g0235 714 ProSiteProfiles Zinc finger RING-type profile. 667 708 IPR001841 -
Bisa05g0235 714 MobiDBLite consensus disorder prediction 437 477 - -
Bisa05g0235 714 SMART ring_2 667 707 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0235 Bisa-ChrBisa05 3636758 3640459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0235 1 714 C3H Transcription Factor Family AT2G15530 33.023 2.18e-85 282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0235 05 3636758 3640459 Bisa09g1866 09 29226538 29230518 CCT
Bisa05g0235 05 3636758 3640459 Bisa05g0235 05 3636758 3640459 ECH