Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0221 ATGGCGCAAATGCAGGTGCAGCATCTGAACCCCGCGTCGGCTCCCAATGGTGTGGCGCCGGTTCCGATTGTGAACCAATTCCCCGTTATATCCTTGTACGTTGGGGATCTTGACCCGAACGTGAACGATTCTATGCTCTACGATCACTTCAACAAGTTTGGTCAAGTTCTCTCTGTTCGGGTTTGCAGGGACCTTACCAGCCGTCGATCCCTCGGTTACGGTTATGTTAATTACAGTAACCATCAGGATGCGGCCAGAGCAGTGGAAGAACTCAATTTCACTCCGCTGAACAACAAACCCATCAGGATCATGTATTCCAATCGGGATCCTAGTACTCGCAAGAGTGGTACAGCAAATATATTTATCAAGAATTTGGACAAGTCAATTGACCACAAAGCTTTGCATGAGACTTTTTCTGCTTTTGGAAATATTCTTTCTTGCAAGATAGCAACAGATGCTTCAGGCCAGTCCAAAGGCTATGGTTTTGTTCAATTTGACAAAGAAGAATCTGCACAGACTGCTATTGATAAGTTAAATGGCATGCTGCTGAATGATAAACAGGTTTATGTAGGGCATTTTCTTAGAAAGCAGGATAGAGAAAGTGCTTCAAATAAGACAAAATTTAATAACGTCTATGTGAAAAATCTGTCAGAGGCAATGACAGATGAAGATTTGAAGAAAATTTTTGGAGAATATGGAACCATTACTAGCGCTGTAGTAATGAGAGATCTGGATGGTAAATCAAAGTGTTTTGGTTTTGTCAATTTTGAGAACGCAGGTGATGCTGCTAAAGCTGTTGAGGGTCTTAATGGAAAGAATTTTGATGAAAAGGAGTGGTATGTTGGGAAGGCCCAGAAAAAATCTGAAAGAGAGCTTGAGTTGAAAGGACGATTTGAGGAGAGTATGAAGGAAGCTGTCGACAAATATCAAGGTGTTAACTTGTATGTCAAGAACTTGGATGATAGCATTGGTGATGAAAAACTAAAGGAAATGTTCTCAGATTTTGGTACAGTAGCCTCATGCAAGGTTATGCGTGACCCAAATGGAAATAGTAGAGGATCGGGATTTGTTGCCTTTTCAACTCCTGAGGAAGCATCTCGAGCCCTTGCCGAGATGAATAGCAAAATGGTTGCTGGCAAACCTCTATATGTTGCATTTGCTCAAAGAAAAGAAGACAGAAGAGCAAGGTTACAGGCACAATTTTCTCAAATGAGGCCTGTTACAATGCTTCCTTCTGTTGGCCCACGCATGCCAATGTACCCTCCTGGTGCTCCAGGTCTTGGACAACAATTTTTGTATGGGCAAGCCCCTCCTGCTATCATTCCTCCACAAGCTGGATTTGGTTATCAGCAGCAACTTGTTCCTGGGATGAGGCCTGGTGGTGCTCCAATGCCAAACTTTTTCATCCCAATGGTTCAGCAGGGTCAACAAGGTCAGCGCCCTGGTGGACGTCGTGGTGCTGGTCCTGTGCAACAATCCCAGCAGTCAATGCAACTGGTGCAGCCACAGATGCTTCCAAGGGGCCGCACCTATCGATACCCTCCTGGTCGCAACATGCAAGATATTCCTGTGCCAGGGGGAGCTGGAGGTATGCATTCTGCCCCTTATGACATGGGTGGTGTGCCAATCCGGGATGCTGTGGGACAACCAATGCCCATTCAGGCCTTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGCGGACTATGCTGGGTGAAGCATTATACCCTCTAGTTGATCAGCTGGAACATGATGCATCAGCTAAGGTTACAGGCATGCTTTTGGAGATGGACCAGACTGAGGTATTGCATCTGATTGAGTCACCGGATGCTCTCAAGGCAAAAGTTGCTGAAGCAATGGATGTTTTGAGAAATGTTGCTCAGCAAGTTAACAGCCCGGCCGATCAACTGGCTTCACTCTCTCTGAACGAAAATCTCGTCTCCTAA 1950 0.4559 MAQMQVQHLNPASAPNGVAPVPIVNQFPVISLYVGDLDPNVNDSMLYDHFNKFGQVLSVRVCRDLTSRRSLGYGYVNYSNHQDAARAVEELNFTPLNNKPIRIMYSNRDPSTRKSGTANIFIKNLDKSIDHKALHETFSAFGNILSCKIATDASGQSKGYGFVQFDKEESAQTAIDKLNGMLLNDKQVYVGHFLRKQDRESASNKTKFNNVYVKNLSEAMTDEDLKKIFGEYGTITSAVVMRDLDGKSKCFGFVNFENAGDAAKAVEGLNGKNFDEKEWYVGKAQKKSERELELKGRFEESMKEAVDKYQGVNLYVKNLDDSIGDEKLKEMFSDFGTVASCKVMRDPNGNSRGSGFVAFSTPEEASRALAEMNSKMVAGKPLYVAFAQRKEDRRARLQAQFSQMRPVTMLPSVGPRMPMYPPGAPGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFIPMVQQGQQGQRPGGRRGAGPVQQSQQSMQLVQPQMLPRGRTYRYPPGRNMQDIPVPGGAGGMHSAPYDMGGVPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDASAKVTGMLLEMDQTEVLHLIESPDALKAKVAEAMDVLRNVAQQVNSPADQLASLSLNENLVS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0221 649 SMART rrm2_1 210 282 IPR003954 GO:0003676
Bisa05g0221 649 SMART rrm2_1 31 104 IPR003954 GO:0003676
Bisa05g0221 649 SMART rrm2_1 119 191 IPR003954 GO:0003676
Bisa05g0221 649 SMART rrm2_1 313 385 IPR003954 GO:0003676
Bisa05g0221 649 FunFam Polyadenylate-binding protein 9 113 - -
Bisa05g0221 649 CDD RRM1_I_PABPs 31 110 IPR034364 -
Bisa05g0221 649 Gene3D - 548 631 - -
Bisa05g0221 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Bisa05g0221 649 FunFam Polyadenylate-binding protein 548 630 - -
Bisa05g0221 649 FunFam Polyadenylate-binding protein 295 400 - -
Bisa05g0221 649 SMART poly_2 564 627 IPR002004 GO:0003723
Bisa05g0221 649 MobiDBLite consensus disorder prediction 474 499 - -
Bisa05g0221 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Bisa05g0221 649 SUPERFAMILY RNA-binding domain, RBD 31 199 IPR035979 GO:0003676
Bisa05g0221 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Bisa05g0221 649 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 625 IPR006515 GO:0003723
Bisa05g0221 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Bisa05g0221 649 CDD RRM4_I_PABPs 311 389 - -
Bisa05g0221 649 CDD RRM2_I_PABPs 116 192 IPR045305 -
Bisa05g0221 649 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Bisa05g0221 649 Gene3D - 296 397 IPR012677 -
Bisa05g0221 649 Gene3D - 194 295 IPR012677 -
Bisa05g0221 649 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676
Bisa05g0221 649 PANTHER RNA BINDING PROTEIN 31 92 - -
Bisa05g0221 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Bisa05g0221 649 CDD RRM3_I_PABPs 208 287 - -
Bisa05g0221 649 Gene3D - 26 118 IPR012677 -
Bisa05g0221 649 FunFam Polyadenylate-binding protein 199 294 - -
Bisa05g0221 649 Gene3D - 119 192 IPR012677 -
Bisa05g0221 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Bisa05g0221 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Bisa05g0221 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Bisa05g0221 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Bisa05g0221 649 SUPERFAMILY PABC (PABP) domain 494 633 IPR036053 GO:0003723
Bisa05g0221 649 SMART rrm1_1 210 282 IPR000504 GO:0003723
Bisa05g0221 649 SMART rrm1_1 313 385 IPR000504 GO:0003723
Bisa05g0221 649 SMART rrm1_1 119 191 IPR000504 GO:0003723
Bisa05g0221 649 SMART rrm1_1 31 104 IPR000504 GO:0003723
Bisa05g0221 649 FunFam Polyadenylate-binding protein 119 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0221 Bisa-ChrBisa05 3328952 3332614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0221 1 644 Eukaryotic Initiation Factors Gene Family AT4G34110 67.231 0.0 860
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0221 05 3328952 3332614 Bisa05g0221 05 3328952 3332614 ECH