Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0164 ATGGCTTTGGAAGCTCTGAAATCACCCACCACCGCTCCTCCGTCCTTTCCCTTCGAACTAGACTCCAACCTTCATTCCTTGGAGCCATGGACTAAGCGGAAGCGTTCCAAGCGCAGCCGTCTGGAGTCTTCTTGCACCGAGGAAGAGTATCTCGCTCTCTGCCTTATTATGCTGGCTCGCGGTGGAGCCGGTGGCTCCGGGGTCTCGTCCACCAATCCCACCGACTCCGACCGCCATGGGTCTCTTCAGGGTACTCCTCCCCCTGATGTATCTGAGTCGGCGCAGCTAGCGCTGTCCACTCCAGATCCAACCACGACTGCCAAGCTTAGTTACAAATGCTCTGTCTGCGATAAAGCCTTCTCCTCTTACCAGGCTCTCGGAGGACACAAGGCCAGTCACCGGAAACTCGCTGCAGGCGGCGGAACTGGGGAAGATCAATCCACCTCCTCCGCCGTCACAAGTACTTCTGCAAACACCACCACCACATCTAACGGTGGGGGCAAAGCCCACGAGTGCTCCATCTGCCACAAGTCCTTTCCCACCGGACAGGCCTTGGGTGGCCACAAGCGCTGCCACTATGGCGGCGGAGCTGGTGCAGCTGCCGGTGCCGGCGGTAGCAGCGCTATCACCGCCTCGGAAGGGGCTGGGTCCACCCACACCGTCAGCCACAGCCTCCGAGACTTCGATCTGAACCTTCCCGCCGTGCCGGACTTTTCACCCAAGTTCTTCATGTCCGGAGACGACGAGGTCGAGAGCCCTTTGCCAGCGAAGAAGCCGCGCCTCTTGATGGCTCCCAAAACCGAAATCCCCCAACACTAA 819 0.5958 MALEALKSPTTAPPSFPFELDSNLHSLEPWTKRKRSKRSRLESSCTEEEYLALCLIMLARGGAGGSGVSSTNPTDSDRHGSLQGTPPPDVSESAQLALSTPDPTTTAKLSYKCSVCDKAFSSYQALGGHKASHRKLAAGGGTGEDQSTSSAVTSTSANTTTTSNGGGKAHECSICHKSFPTGQALGGHKRCHYGGGAGAAAGAGGSSAITASEGAGSTHTVSHSLRDFDLNLPAVPDFSPKFFMSGDDEVESPLPAKKPRLLMAPKTEIPQH 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0164 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
Bisa05g0164 272 MobiDBLite consensus disorder prediction 249 272 - -
Bisa05g0164 272 Gene3D Classic Zinc Finger 108 192 - -
Bisa05g0164 272 MobiDBLite consensus disorder prediction 142 168 - -
Bisa05g0164 272 MobiDBLite consensus disorder prediction 1 22 - -
Bisa05g0164 272 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 236 IPR044653 GO:0003700
Bisa05g0164 272 MobiDBLite consensus disorder prediction 65 101 - -
Bisa05g0164 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 133 IPR013087 -
Bisa05g0164 272 MobiDBLite consensus disorder prediction 64 101 - -
Bisa05g0164 272 Pfam C2H2-type zinc finger 169 193 - -
Bisa05g0164 272 Pfam C2H2-type zinc finger 111 135 - -
Bisa05g0164 272 MobiDBLite consensus disorder prediction 134 169 - -
Bisa05g0164 272 SMART c2h2final6 170 192 IPR013087 -
Bisa05g0164 272 SMART c2h2final6 111 133 IPR013087 -
Bisa05g0164 272 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Bisa05g0164 272 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Bisa05g0164 272 SUPERFAMILY beta-beta-alpha zinc fingers 111 192 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0164 Bisa-ChrBisa05 2475971 2476789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0164 1 269 C2H2 Transcription Factor Family AT1G27730 49.455 6.63e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa05g0164 zf-C2H2_6 1.9e-12 CL0361