Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0108 ATGGGAAGGGCTCCTTGCTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAAGAAGACGCCAAGCTCAAGTCCTACATCGAACAGCATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAGATCGGGCTAAAGAGGTGTGGAAAGAGTTGCAGACTGAGGTGGCTAAACTATCTTCGACCTAATATCAAGCACGGGGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTCTATGTCAGTATTGGAAGCAGGTGGTCGGTGATAGCAGCTCAATTGCCGGGAAGAACAGACAATGATATAAAGAACTATTGGAACACAAGGCTGAAGAAGAAGCTTTTGGGTAAGCACCGTAAGGACCAACAGTCACGTTGTAGAGGGAAGCAGCATGAGGAAGCTCGTAAAGGGACTACCACTTCAAGTGCTACTACCTCTTCTTCTAATTCCCTATTAATGGTTCAGGAAAATAGCATTACAATCACTCATCAATCTCATTCTCATGATCAACTTCAACACCACCCATATTGGCCACACATGCCTGTGCTAGCTCCCTTGCCATACTCAAATCAAGACCCATGCTTCAACGACCAAGATTCCATCAAAAGATTGCTCATCAAGCTTGGAGGAAGATTCTCCGATGACCATGATCATCATGATCATGATTATCGCCCAACCCTGGATCTTGATGCTGGTTTCAGTAATATTGTTCCTCATCAATTCCCACAACCTATTTATGATCAACAAGTAATAAATAGGGCCTCTCCTTCTTGCGTGAGTAATAACGGTAATGGTACCAACACACAAGAGACAGGAGGAGGAAGTTTCGGTGTAGCAGTACTTGAGGACATTAATGTTGTGAGTAATGCTTATCCACAGAGACTAGATCATGGGATGGAGTTTTTGTATGATAATCCAGAGGATATGAATATGATGGTCAATGACATTAATATATCCGTAGCGCCTACTTGTAGTACTCAAACAGCTACAAATTGGGGTGACACTCTGACTAGCTCTCTCATGAGTTATCCACCTCTTGTAATTCCTTCGAATAATTACCAAGGCATGCCACAAGAATGTGCTTTTCAAGAATTAAGGAGGTACCACGGGGCATGA 1125 0.4364 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKDQQSRCRGKQHEEARKGTTTSSATTSSSNSLLMVQENSITITHQSHSHDQLQHHPYWPHMPVLAPLPYSNQDPCFNDQDSIKRLLIKLGGRFSDDHDHHDHDYRPTLDLDAGFSNIVPHQFPQPIYDQQVINRASPSCVSNNGNGTNTQETGGGSFGVAVLEDINVVSNAYPQRLDHGMEFLYDNPEDMNMMVNDINISVAPTCSTQTATNWGDTLTSSLMSYPPLVIPSNNYQGMPQECAFQELRRYHGA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0108 374 FunFam Transcription factor RAX3 7 68 - -
Bisa05g0108 374 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bisa05g0108 374 CDD SANT 71 113 IPR001005 -
Bisa05g0108 374 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bisa05g0108 374 FunFam Transcription factor RAX3 70 143 - -
Bisa05g0108 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bisa05g0108 374 PANTHER OS09G0431300 PROTEIN 1 241 - -
Bisa05g0108 374 SMART sant 13 64 IPR001005 -
Bisa05g0108 374 SMART sant 67 115 IPR001005 -
Bisa05g0108 374 Gene3D - 7 68 - -
Bisa05g0108 374 MobiDBLite consensus disorder prediction 118 152 - -
Bisa05g0108 374 Gene3D - 70 144 - -
Bisa05g0108 374 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bisa05g0108 374 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bisa05g0108 374 CDD SANT 16 62 IPR001005 -
Bisa05g0108 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bisa05g0108 374 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0108 Bisa-ChrBisa05 1668355 1669777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0108 1 210 MYB Transcription Factor Family AT3G49690 63.333 9.72e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa05g0108 Myb_DNA-binding 2.6e-14 CL0123