Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0104 ATGGAGGAGTATCATCATAATAATCTGAGCGATACCACTGGTGGGAGGACTAATTTCTTGTACTCATCGTCGAGTGGTGTAGGTGTGGGCGTTGGGTACGGAAGAAGCAGCAGTGGTGGGAATTCAAGCCTTTCTCATCACCTTCCCATCGCTACCTTTCCTCTTCTTCAGCCCGATAATTGCTTTCATCAATCCGATCACTCGCCACACCCTACTGTTAAAACCGAAGCTCCCAACTCCTCCCACCACCACCCTCAGATTTTTCAGTACCCTCTCATGAGATCCAATCTCCACCACACGATGCATCCCCAACAAGCACCCGGAGGAGAGAGCTCCAACGAAGTTGAAGCTATCAAAGCTAAAATCATCGCTCATCCTCAGTACTCCAATCTCCTTCAAGCTTACATGGATTGCCAAAAGGTAGGAGCTCCACCAGAAGTGGTGGCGCGTCTGGCGGCTACTCGGCAGGAGTTCGAGGCACGGCAGCGATCGTCCTCGTCCTCCAGGGAGGTTTCGAAGGACCCGGAACTTGACCAATTTATGGAAGCGTACTATGACATGCTGGTGAAGTATCGAGAGGAATTAACAAGGCCTATACAAGAGGCAATGGATTTCATGCGCAGGATAGAGGCTCAGCTCAACATGCTTTGCAATGGACCCATCCGCATCTTCTCCGATGATAAGTGTGAAGGAGTTGGTTCATCTGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAACTGCCAGAGATTGATCCTAGAGCCGAAGACCGTGAACTTAAGAACCACTTGCTCAGAAAGTATAGCGGTTACTTAAGCAGCCTTAAGCAAGAACTCTCAAAGAAAAAGAAGAAAGGAAAACTTCCCAAAGATGCGAGGCAAAAGCTACTGAGCTGGTGGGAAATACATTACAAATGGCCCTATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAGTCAACTGGATTAGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAGCCTTCTGAAGACATGCAGTTCATGGTGATGGATGGGCTGCATCCACAGAATGCAACTCTCTATATGGATGGCCACTACATTCCAGATGGTCACTACCGTCTTGGCCCTTGA 1134 0.4815 MEEYHHNNLSDTTGGRTNFLYSSSSGVGVGVGYGRSSSGGNSSLSHHLPIATFPLLQPDNCFHQSDHSPHPTVKTEAPNSSHHHPQIFQYPLMRSNLHHTMHPQQAPGGESSNEVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVVARLAATRQEFEARQRSSSSSREVSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIEAQLNMLCNGPIRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWEIHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYIPDGHYRLGP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0104 377 CDD homeodomain 291 343 IPR001356 GO:0003677
Bisa05g0104 377 SMART KNOX1_2 116 160 IPR005540 GO:0003677|GO:0005634
Bisa05g0104 377 SMART ELK_2 259 280 IPR005539 GO:0003677
Bisa05g0104 377 Pfam ELK domain 259 280 IPR005539 GO:0003677
Bisa05g0104 377 SUPERFAMILY Homeodomain-like 280 354 IPR009057 -
Bisa05g0104 377 Pfam KNOX1 domain 117 159 IPR005540 GO:0003677|GO:0005634
Bisa05g0104 377 MobiDBLite consensus disorder prediction 61 84 - -
Bisa05g0104 377 ProSiteProfiles 'Homeobox' domain profile. 279 342 IPR001356 GO:0003677
Bisa05g0104 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 349 - -
Bisa05g0104 377 MobiDBLite consensus disorder prediction 228 256 - -
Bisa05g0104 377 SMART HOX_1 281 346 IPR001356 GO:0003677
Bisa05g0104 377 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Bisa05g0104 377 Pfam KNOX2 domain 171 217 IPR005541 GO:0003677|GO:0005634
Bisa05g0104 377 ProSitePatterns 'Homeobox' domain signature. 317 340 IPR017970 GO:0000981|GO:0006355
Bisa05g0104 377 Pfam Homeobox KN domain 299 338 IPR008422 GO:0003677|GO:0006355
Bisa05g0104 377 Gene3D - 284 346 - -
Bisa05g0104 377 ProSiteProfiles ELK domain profile. 259 279 IPR005539 GO:0003677
Bisa05g0104 377 FunFam Homeobox protein knotted-1-like 2 284 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0104 Bisa-ChrBisa05 1613633 1616863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0104 1 377 Homeobox Transcription Factor Family AT4G08150 62.408 4.20e-156 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa05g0104 KNOX2 2.5e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0104 05 1613633 1616863 Bisa05g0104 05 1613633 1616863 ECH