Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0103 ATGATCGGAGAATCAACCCTTTTGGTTCCCAAACTTGTAATTTCTCAATCCAACCTATCCGACAGTTCAATGAGATCATTGCCATCTCCTGTCCCCATTGATGCTTTCTCTGTCAGCTTCAATGGCAATGCCGGTGGTTCCGGCTATCCACCGTCCATTGATTCCTCCCCTGCTTTCCACAGTTTTCTTTCAAATGATCTTACGCCCATCGATTTGGACTCACTCTGTGAAGATTTCGACCTGCCTTTTGATGCTTTCTCCCGCGATCATTTCCGAATGTTCGAGTTTAAGATTCGGAAATGCACGCGCTCCAGGTCACACGACTGGACAGAGTGTCCGTACGCCCATCCAGGCGAGAAGGCCCGCCGGAGGGACCCTCGGAAGCATCACTACTCCGGCGCCGCGTGCCCCGAGTTTCGCAGAGGGAATTGCAAGAAAGGAGACTCGTGCGAGTTTGCTCATGGAGTATTCGAATGCTGGCTTCATCCGTCTCGTTACAGGACTCAGTTCTGCAAGGACGGCACAAATTGTCGCCGCCGAGTGTGTTTCTTCGCTCACAATCCAGATCAACTCCGGTTCATCGCCAACGGGTCGGGCGATTCGTCGGACGGGTCACAGACTTGCTTCGTTTCATCGCCGACTTCGGTCCTTAACTCATCGCCGATCTCCTCGCTGTCGGACTCTCCGCCATCATCGCCGGGCACTCACGGATACTGCGTGAGTGAAATAGCCACCTCAATGCGTAACGTTCAAATCGACACTCGCGTTCCACAACATAGCTGTGGGTTTGGTTCCCCTCGGGGCTTCCAGATCGGTTGGGGGCGCGGTTCGAATCTCCGGCCCGGTTTTTTTAGCGCTCCTTCAACTCCAACTCGGGGTGTGACCAAATCTGGGCATAGTCCACTGGACACGTGGGATCAGATCCAGAGCCACGAAGAAGAACCTGCAATGGAGAGGGTGGAATCTGGAAGAGAACTCAGAGCAAAAATCTACGCTAAGCTCAGCAAGGAGAACTCTTTTGGCCCAAGAAACACATGA 1038 0.5308 MIGESTLLVPKLVISQSNLSDSSMRSLPSPVPIDAFSVSFNGNAGGSGYPPSIDSSPAFHSFLSNDLTPIDLDSLCEDFDLPFDAFSRDHFRMFEFKIRKCTRSRSHDWTECPYAHPGEKARRRDPRKHHYSGAACPEFRRGNCKKGDSCEFAHGVFECWLHPSRYRTQFCKDGTNCRRRVCFFAHNPDQLRFIANGSGDSSDGSQTCFVSSPTSVLNSSPISSLSDSPPSSPGTHGYCVSEIATSMRNVQIDTRVPQHSCGFGSPRGFQIGWGRGSNLRPGFFSAPSTPTRGVTKSGHSPLDTWDQIQSHEEEPAMERVESGRELRAKIYAKLSKENSFGPRNT 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0103 345 SMART c3hfinal6 165 188 IPR000571 GO:0046872
Bisa05g0103 345 SMART c3hfinal6 130 156 IPR000571 GO:0046872
Bisa05g0103 345 Gene3D - 130 193 - -
Bisa05g0103 345 ProSiteProfiles Zinc finger C3H1-type profile. 131 157 IPR000571 GO:0046872
Bisa05g0103 345 MobiDBLite consensus disorder prediction 217 236 - -
Bisa05g0103 345 FunFam Zinc finger CCCH domain-containing protein 66 88 156 - -
Bisa05g0103 345 PANTHER UNKEMPT FAMILY MEMBER 80 344 IPR045234 -
Bisa05g0103 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0103 Bisa-ChrBisa05 1578479 1579516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0103 80 237 C2H2 Transcription Factor Family AT5G12850 54.491 1.79e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa05g0103 zf-CCCH 2.8e-06 CL0537