Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0066 ATGATGAAAGGTTTGGTGGTAGATGAAACTATGTCCAACTTGACATCTGCATCTAGTGAAATAAGTGCTTCATCTGGGACTATGAATCCTCATCACTCCTCCACTTCAACAAATCAAGAACCTCATCAACCCAAAAAGAAGAGAAGCCTTCCAGGCCACCCAGACCCAGAAGCCGAAGTGATAGCCTTGTCTCCAAAGACCCTCTTGGCCACAAACCGGTTCATTTGCGAGGTATGCAACAAAGGGTTTCAGAGAGACCAGAATCTGCAGCTTCACAGAAGAGGCCACAATTTGCCATGGAAGCTGAAGCAAAGAAGCAACAAGGACATCATAAGGAAGAAAGTGTATGTGTGCCCAGAGGTCACGTGCGTTCACCATGACCCTTCAAGGGCCCTGGGTGACCTCACAGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGATAAATGCTCAAAGCGTTACGCTGTTCAGTCCGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAAAGAGTACAAGTGTGACTGCGGAACCCTCTTCTCTAGAAGGGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCTTTGGCACAGGAGAGTGCCAGAGCAGTGACAGCAGTGAACCCTCTTCTTCACACCCACCATCCCTTCCAACCTCCACTCAAAAAAGAACAAGAATTTCTGCCCTGGCTGGGGGATCCTGCTGGATTAACCTCTCTCAGGCCATTATCATCTTCAACCTCATCCTCATCACTGCTTCCTGCAGTCCCAACACATTTAGACCAATCCTTAAACTTAATTCAAAATCCTAACCCCACAGCCACACCACCACCTTCCCTTTTTCAATCAGCTGCATCCCCATCTTCTCCATACATGTCAGCCACTGCTTTGTTGCAGAAGGCATCCCAAATGTGTCACATGCCTCACTCTGATCATCATCAGTGTACCACACCCGCAGTGCCTAATTCAGCAACATTATCATCATCAGCAGTTTCTGGTTTGGGTATGCCCTCACGTGACCCAATGGGTTTCCCTCATGCCTTGGCTTCTTATGGGAATAAAGCTGCTGCCTTTTCCTCTGATTACTTGGAACACAATGCTGCTGTTTCTGCCATTTGCAACAATACAGCATCTCCACCTAATACTGCTACGGCTACTTCTTCTGTTTTCCATGACATGATGGGTTCTACTGTGGCTCTATCAAGTGGGTTTGAGAGGTCTTCCTTCGAGGAGGCCTTCAGAGGAATGTTGAATAATAATCCAACCAGAGATCACACCGAGTTTCAGTTTAGTAAAAGCAACAAGGCCACTCTTCCTAATCACACCGATAACGAAATGACCAGAGATTTTCTGGGTCTCAATGCATTTTCTCACAGAGATTTTTTCGATATGTCCGGCCTTGATCATCTGGGTTCTTCGTCGTACGGTAAGCAAAATCACAACCAAACACCTTGGCAAGGTTGA 1482 0.469 MMKGLVVDETMSNLTSASSEISASSGTMNPHHSSTSTNQEPHQPKKKRSLPGHPDPEAEVIALSPKTLLATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIRKKVYVCPEVTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAQESARAVTAVNPLLHTHHPFQPPLKKEQEFLPWLGDPAGLTSLRPLSSSTSSSSLLPAVPTHLDQSLNLIQNPNPTATPPPSLFQSAASPSSPYMSATALLQKASQMCHMPHSDHHQCTTPAVPNSATLSSSAVSGLGMPSRDPMGFPHALASYGNKAAAFSSDYLEHNAAVSAICNNTASPPNTATATSSVFHDMMGSTVALSSGFERSSFEEAFRGMLNNNPTRDHTEFQFSKSNKATLPNHTDNEMTRDFLGLNAFSHRDFFDMSGLDHLGSSSYGKQNHNQTPWQG 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0066 493 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Bisa05g0066 493 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Bisa05g0066 493 Gene3D Classic Zinc Finger 129 209 - -
Bisa05g0066 493 MobiDBLite consensus disorder prediction 271 293 - -
Bisa05g0066 493 MobiDBLite consensus disorder prediction 16 58 - -
Bisa05g0066 493 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
Bisa05g0066 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 469 IPR031140 -
Bisa05g0066 493 Pfam Zinc-finger double-stranded RNA-binding 74 96 IPR022755 -
Bisa05g0066 493 MobiDBLite consensus disorder prediction 16 40 - -
Bisa05g0066 493 SMART c2h2final6 74 96 IPR013087 -
Bisa05g0066 493 SMART c2h2final6 116 146 IPR013087 -
Bisa05g0066 493 SMART c2h2final6 151 171 IPR013087 -
Bisa05g0066 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Bisa05g0066 493 FunFam protein indeterminate-domain 12-like 53 122 - -
Bisa05g0066 493 Gene3D Classic Zinc Finger 53 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0066 Bisa-ChrBisa05 1025402 1027283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0066 7 209 IDZ Gene Family AT3G50700 78.922 2.79e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa05g0066 zf-C2H2_jaz 8.4e-05 CL0361