Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0054 ATGGGTTTCAGTGCATCAAAAGCCCCCGACCATGGACGGTACGACTCTCTCGTGTTTGCCCTTCTCACCGGCGCCCTCTCTCTGCTACGTCGCCTCTTTCCTCAACTCCTCCAACTTCAGCCGTCGAAGATCCGAATAGTTTGGGAAATACTAGCTTCGAAATCTACTTACAAAGGCGCCCTTTTAAGTAGTTGTTGCTTCTACTCTCTCTGTGAAAGATCGATTTTTGTTATGGGTGTAGTCTGGTTTACGAGCACTTTTGCAGTCATGGCTAGCTCTAGCTCAGCACTGGATGGGTCGCAATTTGATGCTCGTCAATTTGATGCTAAGATGACTGAATTACTTGGAACTGAAGGGCAAGATTTCTTTACTAGTTATGATGAAGTTTATGAAAGCTTTGATGCTATGGGATTGCAGGAGAACCTTCTGAGGGGCATTTATGCATATGGTTTTGAGAAGCCCTCTGCCATTCAGCAAAGAGGGATTGTTCCTTTCTGCAAGGGACTGGATGTAATTCAGCAAGCACAATCTGGAACTGGGAAAACTGCTACATTTTGTTCTGGAATTTTGCAGCAGCTTGATTACAGCTTAGTTGAATGCCAGGCACTGGTTCTTGCTCCCACTCGTGAACTTGCACAACAAATTGAGAAGGTCATGCGAGCACTGGGCGACTATCTTGGTGTCAAGGTTCATGCTTGTGTGGGTGGCACCAGTGTTCGAGAAGATCAAAGGATCCTCTCAAGTGGGGTTCATGTTGTTGTTGGTACCCCTGGACGTGTGTTTGACATGCTGCGGAGACAATCTTTGCGCCCTGATTACATTCGAATGTTTGTGTTGGATGAGGCAGATGAGATGCTTTCTCGGGGATTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCACCAAAAATTCAGGTTGGGGTTTTCTCTGCCACCATGCCACCAGAGGCCCTTGAGATCACAAGGAAGTTCATGAATAAACCAGTGAGGATCTTGGTGAAACGCGATGAGCTTACCCTGGAAGGGATCAAGCAATTTTATGTCAATGTTGAGAAGGAGGAATGGAAACTTGAGACACTGTGTGATCTTTATGAGACATTGGCAATTACCCAGAGTGTTATCTTTGTGAACACCAGGCGCAAGGTAGATTGGCTGACAGACAAGATGCGCAGTCGTGATCACACAGTATCAGCAACCCATGGAGATATGGACCAAAACACAAGAGACATCATCATGAGGGAATTCCGTTCTGGGTCTTCCCGTGTTTTGATCACGACAGATCTATTGGCTCGCGGTATTGATGTCCAACAAGTTTCACTTGTTATTAATTATGATCTGCCAACCCAGCCAGAGAACTATCTGCATCGAATTGGTCGTAGTGGTCGATTTGGGAGGAAGGGTGTTGCTATCAATTTTGTGACCAAGGATGATGATAGGATGCTGTTTGACATCCAAAAGTTTTACAATGTGATGATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTTTGA 1515 0.4554 MGFSASKAPDHGRYDSLVFALLTGALSLLRRLFPQLLQLQPSKIRIVWEILASKSTYKGALLSSCCFYSLCERSIFVMGVVWFTSTFAVMASSSSALDGSQFDARQFDAKMTELLGTEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDRMLFDIQKFYNVMIEELPANVADLL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0054 504 Pfam Helicase conserved C-terminal domain 357 465 IPR001650 -
Bisa05g0054 504 PANTHER RNA HELICASE 115 488 - -
Bisa05g0054 504 FunFam Eukaryotic initiation factor 4A-III 339 504 - -
Bisa05g0054 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Bisa05g0054 504 SMART ultradead3 150 347 IPR014001 -
Bisa05g0054 504 FunFam Eukaryotic initiation factor 4A-II 119 338 - -
Bisa05g0054 504 Pfam DEAD/DEAH box helicase 156 317 IPR011545 GO:0003676|GO:0005524
Bisa05g0054 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 485 IPR027417 -
Bisa05g0054 504 CDD DEADc_EIF4A 135 333 - -
Bisa05g0054 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 332 IPR014001 -
Bisa05g0054 504 Gene3D - 121 339 IPR027417 -
Bisa05g0054 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 131 159 IPR014014 GO:0003724
Bisa05g0054 504 SMART helicmild6 384 465 IPR001650 -
Bisa05g0054 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 504 IPR001650 -
Bisa05g0054 504 CDD SF2_C_DEAD 344 474 - -
Bisa05g0054 504 Gene3D - 340 504 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0054 Bisa-ChrBisa05 920557 924510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0054 96 504 Eukaryotic Initiation Factors Gene Family AT1G72730 89.024 0.0 763