Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g2343 ATGTTACTTCTTACCAGGAGGCAATTAGTGATAGGGATAGGCAGATTGGGCTATTTTCTCGTCGATGAGTTAGAATCTGATGCGGTATTAGCTAGATGGGATCCAGTTGAAGCATGCGGGCCTACAATTGATGAAGCACCTGTGTTTTATCCAACTATTGGATTGTCCCTCCACCTTGCTGGGTTCCACCCTGCCCACTTAAGGAGAAAATGTTATGGGAAAATGCCAAATTTCCAACCCGAAAGCTACTTTGGGTTAAAAGATGCCAAACAAGACCTAAATATTAGTGATGATAATAATCAAAACAGATGGGAGCCCTCTGTGGACGACATTGAAAGTGAATATTGGCGAATAGTTGAGCAACCAGCAGATGAAGTTGAGGTGCATTATGGAGCTGACTTGGAAATTGGAGCACTTGGAAGTCGTTTTCCTAAGGCATCATCCCCAACTGAAAGTAATTTGGATCAGTATGCCCTGTCTGGCTGGAATCTGAATAACTTTCCTGGACTTCCTGGGTCTGTACTATGTTTTGAAGGAAGTGATATTTCAGGAGTACTTGTGCCTTGGCTATATGTGGGGATGTGTTTTTCATCCTTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTACACTGGGGTGATCCTAAAGTATGGTATGGAGTACCTGGAAGCCATGCTTCAGCTTTGGAAGTCTACTGTAAGGGTAGTCTATCTGTAGATAATAGAAATGGATATACAGTAGAAGCTATAGTTATTAGTAGACTGAATTTTGACAATCTGGGTTCTGCAAATAGTTATCTTGTTAGTTTATCTCCACAGTTACCTAGCACAGCTGTGATCTATCCAGATTTCACATATGTGTTTGATGTTCTTGTTACGCAACTATCCCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTATATCACACTGTTCAACATTCTGGGGAATTTGCTATTACCTTTCCAAGGGCTTACCACTCTGGCTTCAATTGTGGCTTCAATTGTGCCGAGGCAGTGAATGTGGCTCCCGTTGATTGGTTAGTGCATGGCCAGAATGCGGTTGAGCTTTACAGTAAGCAATGTCACAAGACAGCATTGTCACATGACAAGTTGTTATTAGGATCAGCTCAGGAAGCTTTGCGAGCTCTTGCAGAGCTAGAACTTGGAAAGGAAACTTCAAAAAGTTTAAAATGGAAAAGTGTCTGTGGGAAAGATGGAGTTCTTACCAAGACAATTAAGGACTTCCAGAATCTGGAAATGGATTTGAACCAGCATGAAAGCCATTTCTGTGTTCTCACTTTATGGAACACAAACAAAGATGATATTGATATGTATATATACACGACTCTTGAGGGCCCTTTTAGAATAGTAACACTAATGGTGTTGCCATAA 1404 0.4124 MLLLTRRQLVIGIGRLGYFLVDELESDAVLARWDPVEACGPTIDEAPVFYPTIGLSLHLAGFHPAHLRRKCYGKMPNFQPESYFGLKDAKQDLNISDDNNQNRWEPSVDDIESEYWRIVEQPADEVEVHYGADLEIGALGSRFPKASSPTESNLDQYALSGWNLNNFPGLPGSVLCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASALEVYCKGSLSVDNRNGYTVEAIVISRLNFDNLGSANSYLVSLSPQLPSTAVIYPDFTYVFDVLVTQLSPSILKSEGVPVYHTVQHSGEFAITFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSKQCHKTALSHDKLLLGSAQEALRALAELELGKETSKSLKWKSVCGKDGVLTKTIKDFQNLEMDLNQHESHFCVLTLWNTNKDDIDMYIYTTLEGPFRIVTLMVLP 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g2343 467 PANTHER LYSINE-SPECIFIC DEMETHYLASE 98 435 - -
Bisa04g2343 467 ProSiteProfiles JmjC domain profile. 156 362 IPR003347 -
Bisa04g2343 467 SUPERFAMILY Clavaminate synthase-like 166 383 - -
Bisa04g2343 467 Gene3D Cupin 66 368 - -
Bisa04g2343 467 Pfam JmjC domain, hydroxylase 189 246 IPR003347 -
Bisa04g2343 467 Pfam JmjC domain, hydroxylase 294 345 IPR003347 -
Bisa04g2343 467 SMART cupin_9 156 362 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g2343 Bisa-ChrBisa04 74725533 74731312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g2343 81 423 JUMONJI Transcription Factor Family AT1G30810 58.960 5.70e-128 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bisa04g2343 JmjC 3.1e-17 CL0029