Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g2341 ATGTCTCAAATCTCAATACATTGCAGTAAAAAGCATGAAATGGCGTCAGGATGCATTAGTTATAAAAATCATGAAAGGTGGGGCCCATCTATTTTGCAATCTGAGAAGAGGAACAGATTGACAGAAATGGCGAAATTCTCCGTTGGTGGTGATGACGATGGGGAAGGACCCAGCAACCCGACCCAAAAGCGACGTAGGATTACTGTTTGCTGCGGCACCGTGGGAGAAGACGCACGAGAAGACATCGGAGACACAAGTGGAACGGAACACCAACCAGATGATCTTGAGCAGGAAGTAGAAGTGGCACCAAGTGAAGAACACGATGCAGATGATGAAGATCCTTTTGGCTTCGATTCTTTGTTTCTGGTTAGATCCAAATCAAACGACAGCGGTGGAAAGAACAATGTTTCCTCAACGCAAAATAAGGATAGGTCCATTTCCCTCACCCTTACCGACCCTGATGTGCTTGATTGCTGCATCTGCTATGAGCCCTTGACTATCCCTACTTTCCAGTGCGAGAATGGGCACATTGCTTGCTCTTCCTGCTGTGTCAAACTTGGGAATAAGTGTCCCATGTGCTGTATGCCCATTGGCTATAACCGTTGCCGAGCCATTGAGAAGGTGTTGGAATCTGTCAAGATATCCTGCATAAATGCAAAATATGGCTGTAAAGAGACAGTGAGTTACAGTAAGAAAAATGAACATGAAAAGAAATGCATTCATGCGCCATGTATATGCCCGCATTCAAGTTGCGACTTTGTTGCCTCATTCAAGGAGTTGTCCCTCCACATAAGCTGTAAACATGAGGATTCTGCAAGGCAATTTACGTATGATCGCTTCTTCTCTGTCTTCCTAAAGGTGAACGACGAATTCATTGTTCTTCAAGAGGAGAATGGTGCTGATCTATTCATGCTCAACAATAAGGTGGAGGCTCTGGGAAATATGGTTAATGTCAGTTGCATTGGCCCCGATTCGTTGAAAACTGTGTATCAGTATGATATTTGTGCTAGATCTCAGGGTTGTTGTCTAAAATTACAATCTTTTGCCAAGAACACTCAAGGTCGCAATGCCAATAATACTACTTCAACAGGGTTTCTTTTGATCCCATCTAGTTTTTTTGGTTCTTCTGGACAGCTCAAACTGGACATTCGCATAGGGGGCGGTCTTAATCTTCTAGGAGCAAAGATCTTATTAATGTAG 1200 0.4367 MSQISIHCSKKHEMASGCISYKNHERWGPSILQSEKRNRLTEMAKFSVGGDDDGEGPSNPTQKRRRITVCCGTVGEDAREDIGDTSGTEHQPDDLEQEVEVAPSEEHDADDEDPFGFDSLFLVRSKSNDSGGKNNVSSTQNKDRSISLTLTDPDVLDCCICYEPLTIPTFQCENGHIACSSCCVKLGNKCPMCCMPIGYNRCRAIEKVLESVKISCINAKYGCKETVSYSKKNEHEKKCIHAPCICPHSSCDFVASFKELSLHISCKHEDSARQFTYDRFFSVFLKVNDEFIVLQEENGADLFMLNNKVEALGNMVNVSCIGPDSLKTVYQYDICARSQGCCLKLQSFAKNTQGRNANNTTSTGFLLIPSSFFGSSGQLKLDIRIGGGLNLLGAKILLM 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g2341 399 SUPERFAMILY TRAF domain-like 211 385 - -
Bisa04g2341 399 CDD RING-HC_SIAHs 156 193 - -
Bisa04g2341 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 264 IPR013083 -
Bisa04g2341 399 MobiDBLite consensus disorder prediction 77 97 - -
Bisa04g2341 399 Pfam Seven in absentia protein family 201 370 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bisa04g2341 399 ProSiteProfiles Zinc finger RING-type profile. 158 193 IPR001841 -
Bisa04g2341 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 114 385 IPR044286 -
Bisa04g2341 399 MobiDBLite consensus disorder prediction 98 114 - -
Bisa04g2341 399 MobiDBLite consensus disorder prediction 43 114 - -
Bisa04g2341 399 ProSiteProfiles Zinc finger SIAH-type profile. 211 269 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g2341 Bisa-ChrBisa04 74668396 74674430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g2341 154 389 C3H Transcription Factor Family AT2G41980 25.703 1.31e-17 80.9