Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g2281 ATGTTGGGTGGGCTATACGGAGACCTCCCTCCACCCTCTTCTGCTGAAGAAGAGAAACCCAGCAACTCCAATGTATGGTCCAGCAGTACCAAGATGGCGCCGGCCACACTGCGTAAGCCGGCATCGGTTTTTGCTCCTCCACAAACAGTTCTGAGAGCCCAGAACAAGCCTAAAACTGTCAATTCTTCAGCACCCAAAGCAGTGGCATCAACACCGGCTGCAGCACCGTCACCAGTGTTGCCCGATGATGTGGCGCAACCAGCTCTTGTGGGTGTCCAGTCGACGGTGATAGAGGAGTATGACCCAGCTAGGCCGAATGACTATGAGGAGTATCGGAGGGAGAAGAAGAGGAAGGCTAGGGAGGCTGAGATGATGAAAGAGATTGAGAGGAGACGGCAGGAAGAGGAAGAGAGGGAGAGGGAGAGGGAGAGGAGAGAGAGGGAGGAGCGAGAGAAGGAAAGAGACAGAGAATACGGGGATTCGAGATTGAATATTTCTGGGGAGGAGGCATGGAGAAGGCGTGCGGCGATGAGTGGGGCAATGCCAAGGTCTCCGTCACCTCCCGCCAATGGCGACGGTTTTACTATTGGAAAGTCAGAAACAGGTGGCTTGGGCCTTGGTGCAGGGGGGCAAATGACTGCAGCTCAAAGAATGATGGCAAAGATGGGATGGAAGGAGGGACAAGGGCTTGGGAAGCAAGAGCAAGGGATTACCACTCCGTTGATGGCCAGGAAAACGGATAGACGAGCTGGAGTTATTGTGAATGCTAGTGACAATAAGTCGGAAAAGAAAGTAAAGAGTGTGAGCCTCAGTGGGCCACCTACACGGGTGCTGCTGCTTAGGAACATGGTGGGCCCTGGTGAGGTAGATGACGAACTTGAGGATGAGGTAGGATCCGAATGTGCCAAGTATGGGACGGTTACTCGGGTTCTGATATTCGAGATCACAGAGCCAAATTTCCCTTCTGATGAAGCGGTCAGAATCTTTGTGCAATTTGAGAGGTCTGAAGAAACAACTAAAGCCATTATTGACCTTGATGGTAGGTACTTTGGAGGTAGAGTGGTAAGAGCCGCATTTTATGATGAAGAGAGGTTTGGTAAGAATGAGTTGGCTCCAATGCCAGGAGAAATTCCTGGCTTTTTCTGA 1146 0.5157 MLGGLYGDLPPPSSAEEEKPSNSNVWSSSTKMAPATLRKPASVFAPPQTVLRAQNKPKTVNSSAPKAVASTPAAAPSPVLPDDVAQPALVGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEMMKEIERRRQEEEERERERERREREEREKERDREYGDSRLNISGEEAWRRRAAMSGAMPRSPSPPANGDGFTIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMARKTDRRAGVIVNASDNKSEKKVKSVSLSGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPSDEAVRIFVQFERSEETTKAIIDLDGRYFGGRVVRAAFYDEERFGKNELAPMPGEIPGFF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g2281 381 PIRSF SPF45 3 377 IPR040052 GO:0045292
Bisa04g2281 381 SMART rrm2_1 277 358 IPR003954 GO:0003676
Bisa04g2281 381 Pfam G-patch domain 214 253 IPR000467 GO:0003676
Bisa04g2281 381 ProSiteProfiles G-patch domain profile. 211 257 IPR000467 GO:0003676
Bisa04g2281 381 FunFam Putative splicing factor 45 275 361 - -
Bisa04g2281 381 SUPERFAMILY RNA-binding domain, RBD 279 364 IPR035979 GO:0003676
Bisa04g2281 381 MobiDBLite consensus disorder prediction 94 162 - -
Bisa04g2281 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 362 IPR000504 GO:0003723
Bisa04g2281 381 MobiDBLite consensus disorder prediction 48 68 - -
Bisa04g2281 381 SMART G-patch_5 209 255 IPR000467 GO:0003676
Bisa04g2281 381 PANTHER SPLICING FACTOR 45 SPF45 1 372 IPR040052 GO:0045292
Bisa04g2281 381 Coils Coil 108 158 - -
Bisa04g2281 381 MobiDBLite consensus disorder prediction 102 162 - -
Bisa04g2281 381 Gene3D - 275 361 IPR012677 -
Bisa04g2281 381 MobiDBLite consensus disorder prediction 1 82 - -
Bisa04g2281 381 MobiDBLite consensus disorder prediction 16 35 - -
Bisa04g2281 381 CDD RRM_UHM_SPF45 274 370 IPR034653 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g2281 Bisa-ChrBisa04 72718241 72722076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g2281 217 252 C2H2 Transcription Factor Family AT5G26610 61.111 7.84e-07 48.5