Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g2264 ATGGCTCATTCAGCAGAACCATCATCATCTTTGAGTTTTACCTCATCTTCCCATTTATCAAATGGCTCTGTTAGCCACAACATATGCTCTTCCAACGGCTCTGAACTTGGGCCTAACCTTGAAGTGATCAGTTTGACTAAGCTCAGCTCTAGTTTGGAGCAGCTTTTGATTGATGCTGATATTGATTTTAGCGATGCCGACATCGTTGTTGAAGGAATACCAGTTAGTGTTCATCGATGTATTCTAGCCTCTAGAAGCAAGTTTTTCTACGATTTATTCAGGAGAAACAAAGGATCTTCAGATAAAGAAGGCAAATTAAAGTATTGCATGAGTGACTTGTTGCCATATGGCAAGGTGGGATATGAAGCCTTCAATATATTCTTGGGCTATTTGTATACCGGGAAACTCAAGCCCTTTCCAATGGAAGTGTCAACTTGTGTTGACAATGCATGTGTCCATGATGCTTGCAGACCAGCAATAAATTTTGCTGTGGAGTTGATGTACGCCTCTTCCATTTTTCAAATACCAGAATTGGTATCACTTTTCCAGCGACGGCTTATTAATTTTGTAGGAAAGGTTCTTGTGGAAGATGTCATCCCAATACTAATTGTTGCTTTCCATTGTCAAGTAAGCCAACTTGTCGCCCAATGTGTTGATAGGGTGGCACGATCAGACCTTGATCAAATCTCAATTGAGAAAGAGCTTCCCCTAGAACTAGCAGATAAAGTTAAACTGCTCCGCCGCATCTCCCAGCAAGATGTTGAAATTGATGCTTCTGTAGTTGATGATTCACTGCATCAGAAAAGAATCAGTAGAATACACAAGGCACTAGACTCAGATGATGTCGAGCTTGTTAAACTACTTTTAAACGAATCGGATATAACGCTAGATGAAGCTAATGCTCTTCATTATGCTGCAGCCTACTGTGATCCTAAGGTTGTTGGTGAGATTCTTGGTTTGGGAATGGCTGATGTCAATCTTCGGAACTCTCGGGGCTACACTGTGCTTCACATTGCTGCGATGCGTAAGGAGCCTTCAATTGTAGTGTCTCTTTTAACAAAAGGGGCTTGTGCATCAGAGGTGACTCTCGATGGTCAGAGTGCTGTTAGTATCTGTAGGAGATTGACAAGACCGAAGGACTATCATACAAAAACAGAACAAGGGAAGGAAACAAACAAAGATCGGATATGCATAGATGTTCTTGAAAGAGAGATGAGGAGAAATCCAATGGCTGGGGATGCTGCTATATCTTCTCAAACAATGGCTGACGATCTGCACATGAAGCTGCTGTATCTTGAGAATAGAGTGGCATTTGCGAGACTATTCTTCCCTACAGAAGCCAAGCTAGCTATGGACATTGCACATGCTCAGACGACATCTGAATTTGCTGGTCTTTCTGCATCAAAAGGTTCAAATGGGAATTTGAGGGAGGTTGATCTAAATGAGACTCCCCTGGTGCAAAACAAAAGACTTCTTTCTAGAATGGAGGCCCTAATGAAAACAGTTGAGATGGGCCGGCGCTACTTCCCTCATTGCTCGGAAGTGCTGGACAAGTTCATGGAGGATGACCTGCCGGACTTGTTTTACCTCGAGAAGGGCACCCAAGAAGAGCAGAAAATCAAGCGGACACGGTTCATGGAGCTCAAAGACGATGTTCAAAAGGCCTTCAACAAAGACAAGGCCGAGATTACTCGTGTCGGGATCGCATCTTCATCATCCTCGTCGTCCCTGAGAGACTCTGTACATTACAAGGCTAGAAAAGTGTGA 1767 0.4324 MAHSAEPSSSLSFTSSSHLSNGSVSHNICSSNGSELGPNLEVISLTKLSSSLEQLLIDADIDFSDADIVVEGIPVSVHRCILASRSKFFYDLFRRNKGSSDKEGKLKYCMSDLLPYGKVGYEAFNIFLGYLYTGKLKPFPMEVSTCVDNACVHDACRPAINFAVELMYASSIFQIPELVSLFQRRLINFVGKVLVEDVIPILIVAFHCQVSQLVAQCVDRVARSDLDQISIEKELPLELADKVKLLRRISQQDVEIDASVVDDSLHQKRISRIHKALDSDDVELVKLLLNESDITLDEANALHYAAAYCDPKVVGEILGLGMADVNLRNSRGYTVLHIAAMRKEPSIVVSLLTKGACASEVTLDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPMAGDAAISSQTMADDLHMKLLYLENRVAFARLFFPTEAKLAMDIAHAQTTSEFAGLSASKGSNGNLREVDLNETPLVQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQKIKRTRFMELKDDVQKAFNKDKAEITRVGIASSSSSSSLRDSVHYKARKV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g2264 588 SUPERFAMILY Ankyrin repeat 266 374 IPR036770 -
Bisa04g2264 588 SUPERFAMILY POZ domain 62 188 IPR011333 -
Bisa04g2264 588 FunFam Regulatory protein NPR3 38 222 - -
Bisa04g2264 588 Gene3D Potassium Channel Kv1.1; Chain A 40 222 IPR011333 -
Bisa04g2264 588 PANTHER REGULATORY PROTEIN NPR3 10 581 IPR044292 GO:0009862|GO:2000022|GO:2000031
Bisa04g2264 588 CDD BTB_POZ_NPR_plant 46 190 - -
Bisa04g2264 588 Pfam Ankyrin repeats (many copies) 300 348 IPR002110 GO:0005515
Bisa04g2264 588 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Bisa04g2264 588 FunFam regulatory protein NPR3-like 265 405 - -
Bisa04g2264 588 Pfam NPR1/NIM1 like defence protein C terminal 373 575 IPR021094 -
Bisa04g2264 588 Pfam Domain of unknown function (DUF3420) 225 274 IPR024228 -
Bisa04g2264 588 MobiDBLite consensus disorder prediction 568 588 - -
Bisa04g2264 588 SMART BTB_4 64 190 IPR000210 GO:0005515
Bisa04g2264 588 ProSiteProfiles Ankyrin repeat region circular profile. 331 356 - -
Bisa04g2264 588 SMART ANK_2a 297 327 IPR002110 GO:0005515
Bisa04g2264 588 SMART ANK_2a 331 363 IPR002110 GO:0005515
Bisa04g2264 588 SMART ANK_2a 268 296 IPR002110 GO:0005515
Bisa04g2264 588 Gene3D - 264 405 IPR036770 -
Bisa04g2264 588 Pfam BTB/POZ domain 62 179 IPR000210 GO:0005515
Bisa04g2264 588 ProSiteProfiles Ankyrin repeat profile. 331 356 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g2264 Bisa-ChrBisa04 72436232 72442688 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bisa04g2264 NPR1_like_C 1.2e-96 No_clan