Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g2259 ATGGAGGATCACGCAGCTTTAGGTGGCGGAGCTCATACTAGTATTGGAAGGGAAGAAGACGAAGATGAGTTTTGCAGTTGTTGTGAAGACGATGAAGTATGGAAAGAAACTGAGCAGCAGGTGGTGGAAGAGTTGAAGGATGACTATGATGAATCTTCGGTAAAGATGTTCTTCAAGGGCCTGTCTATAGCTGGGATTGAAAATTCCAGTTCTGGGTATTCTGGGATCGGAGTGTTCATGGAACGACCATCTGGTCTTCCGGTTATTCGGGTGCAGAAAAAGCTTGATTTTTACTCAGAGGAGCCATTGACTGACTACTTGGCTCTCATAGATGGCTTGCTGGAAGCTGTGCAGAATAAAATCCGCCGGGTTTATGCTTTTACGGATTCTGAGTTGTTGTACGATCAGATAACATTTGAGAAAAATCTTGAGATGCCACTTTTGATAGCACTGAGAGAAAGGGTTCTGGAGCATGCCAATAATTTTGAAACTTTTGCTCTGAATCTTGTTCCCAGTATTGATCTTGAGCAGCCACTGCAATTAGCCAAAGTAGCTATTGGGCTTCTATCTTTCCCTTTGAAAGATGAGAAAGTATTTGGAAGCTGTTCTATTTGTTGCGAGGACAAGTCATTGCCAATAATGATCACCATGAAATGTTCACACAAATTTTGTTCACATTGCTTGAGGTCTTATGCCGATGGAAAAATACAGTCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAATATTACATTTCTACCTCAGAATGCAGGTCTTTTCTTCCATTTGTCTCCTTTGAATCTTTGGAGAAAGTCCTTGCAGAAGCAAATGTTCATCATTCAGATAGAATTTACTGCCCATTTCCAAATTGTTCTGTTCTCTTTGATCCTCGTGAATGTTTATCAGCTAGGGCTAGTTCATCTAGCCAATCAGACAATTCTTGTGTTGAGTGTCCTGTCTGTCAGAGATTTATCTGTGTAGACTGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAGTACCAGAATCTACCGGAGGATGAGAGAGATGCTTCTGACATTACCTTGCATCGCCTTGCTCAAGATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTCGGATGATTGAGCTTACCCAAGGTTGTTATCACATGACATGCTGGTGTGGTTATGAGTTCTGCTATTCTTGTGGCTCGGAATACCAGCGCGGCCAACAGACATGTCAGTGTGTGTTCTGGGATGAAGACAACTCTGAAGACTCAGTGACGCATTCTCTTCAAGAATCAGAGCAATGGGCGTGGGAGACTTTCAATTCTCTCCCCATGATCATGGATGCATACTCAGACCAAGAACGATCGCAGCTTGCTCTTATACAAAGATTCCTTGCCGGGGGTTTCAGTCTGAGTGACCATCATCCCTACCAATCTCCTCCTCGCTGTACAGACTCCTACATCGATGCCATGAAGGATCTCCATCAGCTCCCATGGCTCGAGAGGTTTGTGTCTGTTATAAGTGACAACTACTATGAAGATTATATTCAGTAG 1551 0.4352 MEDHAALGGGAHTSIGREEDEDEFCSCCEDDEVWKETEQQVVEELKDDYDESSVKMFFKGLSIAGIENSSSGYSGIGVFMERPSGLPVIRVQKKLDFYSEEPLTDYLALIDGLLEAVQNKIRRVYAFTDSELLYDQITFEKNLEMPLLIALRERVLEHANNFETFALNLVPSIDLEQPLQLAKVAIGLLSFPLKDEKVFGSCSICCEDKSLPIMITMKCSHKFCSHCLRSYADGKIQSCQVPIRCPQPGCKYYISTSECRSFLPFVSFESLEKVLAEANVHHSDRIYCPFPNCSVLFDPRECLSARASSSSQSDNSCVECPVCQRFICVDCEVPWHSSMSCEEYQNLPEDERDASDITLHRLAQDKRWKRCQQCRRMIELTQGCYHMTCWCGYEFCYSCGSEYQRGQQTCQCVFWDEDNSEDSVTHSLQESEQWAWETFNSLPMIMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPRCTDSYIDAMKDLHQLPWLERFVSVISDNYYEDYIQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g2259 516 Pfam Reverse transcriptase-like 68 171 IPR002156 GO:0003676|GO:0004523
Bisa04g2259 516 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Bisa04g2259 516 SUPERFAMILY RING/U-box 201 275 - -
Bisa04g2259 516 Gene3D - 55 187 IPR036397 GO:0003676
Bisa04g2259 516 ProSiteProfiles TRIAD supradomain profile. 198 416 IPR044066 -
Bisa04g2259 516 FunFam RBR-type E3 ubiquitin transferase 339 464 - -
Bisa04g2259 516 Gene3D - 338 494 - -
Bisa04g2259 516 FunFam RBR-type E3 ubiquitin transferase 197 282 - -
Bisa04g2259 516 SUPERFAMILY Ribonuclease H-like 70 171 IPR012337 -
Bisa04g2259 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 284 IPR013083 -
Bisa04g2259 516 MobiDBLite consensus disorder prediction 1 21 - -
Bisa04g2259 516 SMART ibrneu5 351 410 IPR002867 GO:0008270
Bisa04g2259 516 SMART ibrneu5 269 341 IPR002867 GO:0008270
Bisa04g2259 516 CDD Rcat_RBR_unk 367 403 - -
Bisa04g2259 516 FunFam RBR-type E3 ubiquitin transferase 54 188 - -
Bisa04g2259 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 65 461 IPR031127 GO:0004842|GO:0016567
Bisa04g2259 516 SUPERFAMILY RING/U-box 354 418 - -
Bisa04g2259 516 CDD BRcat_RBR_unk 283 344 - -
Bisa04g2259 516 Pfam IBR domain, a half RING-finger domain 361 410 IPR002867 GO:0008270
Bisa04g2259 516 Pfam IBR domain, a half RING-finger domain 277 341 IPR002867 GO:0008270
Bisa04g2259 516 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g2259 Bisa-ChrBisa04 72286996 72290761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g2259 53 401 C3H Transcription Factor Family AT2G19610 25.348 6.69e-27 110