Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g2076 ATGGGTCGTCGAAAGATTGAGATGAAATTGGTGAAGAACTCAAGTTCAAGGCAAGTCACCTTCTCCAAGCGCAGAACTGGAGTGTTCAAGAAAGCAAACGAGCTAGCGACCTTATGTGGAGCAGAGGTTGCCATTGTTACTTTCTCTCCTGGGGGGAAGCCTTTCTCCTTCGGCCATCCAAGTGTGGATGCTGTGGCCAACAGGTTTCTTCATCGCCGTAACGCCACCAAAAGAAGCAGGTCCAACAATGGCGGGTCCTCCGGCAACAACGGTCTGGTCATGGAGAAGCTGAACCAGCAATTCATGAAGTTGATGAGGGAGAAACAGGTGGAGAAGAAGAAGGGCAAGATGCTTGACAAGGCCTTGAAGCAGAATAACTTAGAAGGGCTGGACTTGAAGGAGCTTCAAAAGCTCAAAGATTCGCTTGAAAAGCTCAAAGATGATGTGAATGAGTGCGTCAAACAGGTGGAGGCATCGTCGTGTTTGATGCTCCTTGCCCAGAAAGCTGTGGACGATAAAGAAAATGGAGGAGCCAATAGATCGAATCATCACACTTTGGAGGAAGATGCTCTTAATGACGTACTTTATTCTAGTTTTGTTTCCCTTTAG 609 0.4729 MGRRKIEMKLVKNSSSRQVTFSKRRTGVFKKANELATLCGAEVAIVTFSPGGKPFSFGHPSVDAVANRFLHRRNATKRSRSNNGGSSGNNGLVMEKLNQQFMKLMREKQVEKKKGKMLDKALKQNNLEGLDLKELQKLKDSLEKLKDDVNECVKQVEASSCLMLLAQKAVDDKENGGANRSNHHTLEEDALNDVLYSSFVSL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g2076 202 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Bisa04g2076 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa04g2076 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa04g2076 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa04g2076 202 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Bisa04g2076 202 Coils Coil 132 155 - -
Bisa04g2076 202 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bisa04g2076 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Bisa04g2076 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa04g2076 202 Coils Coil 94 114 - -
Bisa04g2076 202 PANTHER MADS BOX PROTEIN 3 150 - -
Bisa04g2076 202 MobiDBLite consensus disorder prediction 72 92 - -
Bisa04g2076 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g2076 Bisa-ChrBisa04 67444394 67446269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g2076 1 168 Type I MADS-box Gene Family AT2G34440 45.143 6.91e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa04g2076 SRF-TF 6.1e-24 No_clan