Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1971 ATGCGGGTTTCTGATCCGAGCAAACTCCACCTGAAGAAGGAGCTCACTCAAATTCGTAAAGCTGCTCGTGTACTGAGGGATCCTGGTACGACGTCGTCCTGGAAGTCACCTCTTGGTTCCTCAAGATCTATGGCTGCTCCTTCTGCGTCTGGTTCTGCATGGAAGAGCAACTTGGAGAATGGAAGTAGAAGATTCAGTGGCAATGGGAAAGAGAAGAGCGTGTTCTTGTACAATTGGAAGAATCACAAATCGTCAAGCGAGAAGAGTGGGGTGGCAAAAAACGACAGCGTAGAAGTAGAAGAAGATGAAGTAGAAGAAGATGAAGAAGAAGAAGAAGAAGATGATGATGCTGGTGGCAATGACGCTTCTTCTTCATCTCTTCTGGGAAGTTTCGAGGATAGCTTGAGCGATGCTCGAAACGGTTGCGATTCGAAGAGCGATTCTTACTTGGGAGGTGCGACGCGTTCGTCTATTTTCCGTTGTGGAGATGCAAAGCTTGTTTCGTCGGCGAGAAGAACAATGGGGATTAAGAAAAAAAGTCGGAAAATCAAGCCTCATTTGGATAAACTAGCAAAATTTCAGCCACGAGAGACCAATCTAAGTAGCAAGTTAGTGAATTCCAAGACATTCCTTGAGGGGCATCCTTCAATGGCTTATAATAGGGAGGACGACTCAATAGAACAGTCTGATGATAACACTGAAGATTACTGTAATTCTGAAGATTTAAGGCGAATGTCAGGGGCATCTCCTTTGTTGTTTAAACTCAAGCATAAGAATTGGTCTCGTTCTTCCTCTAAATTACTGAGAAGTAGCCTAAAAGAGGATTCTTCTTATTCTTATAGTACCCCTGCATTATCAACCAGTTCTTATAATAGGCACGGACACCATAATCCTAGTACTGTTGCATCCTGGGATGCCGCGACAACCTCAGTGAATGATGGTGATGATGAGGTAGATGATCACTTGGATTTGCCTGGCCGGCGGGGATGTGGGATTCCCTGTTATTGGTCAAAGAGGACCCCAAAACATAGAGGGATTTGTGGGAGTTGTTATTCTCCTTCACTTTCTGAAACTTTGAGGAGGAAAGGAAGTAGCATATTCTGCGGAAGTCAAACTGTCTATCCAAGACACCGTAGATCCTTGTCAACCTCTAACAAGTGGAGAGTTTCTTCAAGGAGGGCTCAAAGTGTTCTTCCATTGCTCACTAGCAGTGGTGATCTTAGAGGAGGGTCATCGATTGGAACTGGAAGGAGTGATGATGAACTTTCTACAAACTTTGGGGAACTTTATCTTGAGGGTTTAAGCCGGTTAGATGGAAGGAGATGGTCATCAAGTTGTAGGAGTCAAGATGGATTAGAGATTGTGGCTGTAGATGGGGAAGGGGATGAGGAAGGCACACCAGAAAACGCTAGGAGTTTCAGTCAGAAGTATAAGCCTACTTCCTTTGATGAATTGATTGGCCAGAATATAGTGGTTCAGTCACTTATGAATGCTGTCTTAAGGAATCGAATTGCTCCCATTTATCTTTTCCAAGGACCCCGCGGTACTGGCAAAACATCAACATCCAGAATTTTTGCTGCTGCCTTGAATTGTATGGCTCCTGATGCAAGTAAGCCTTGTGGATACTGCAGGGAATGCACTGATTTCATTTCCTGCAAGAACAGGGATCTTTTGGAAGTTGATGGAACCAATAAGAAAGGGATTGATAGAGTTAGATATGTGCTGAAAAGACTATCAGTGGAATCATCATCAGCCTCCTCACGGTACACCGTATTTGTGATCGATGAGTGTCACTTGCTTCCTTCTAAGACATGGCTGACATTTCTCAGGTTTCTTGAAGAACCACCTAAGCAAGTTGTGTTCATATTTATAACAACTGATCTTGACAATGTGCCACGAACAATACTATCTCGATGCCAGAAGTACCTTTTCAACAAAATTAAAGACGGAGATATTGTGGCCAGATTGAGGAAAATATCTGCTAAGGAGAATCTGGATGTTGAAATGGATGCGCTGGACCTTATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTAGAACAGCTGAGTTTGCTGGGGAAAAGAATCACCACTTCTCTTGTTAATGAACTTCTGGGCGTTGTTTCAGATGAAAAATTACTGGAGCTTTTGGAATTAGCAATGTCATCAGACACTGCAGAAACAGTGAAAAGAGCTAGAGAAGTGATGGACTCCGTTGTTGATCCAATGATTTTGATGTCTCAAATGGCTAGCCTCATTATGGACATCATTGCTGGATCATATACTGTTATTGATGCCAAACCTGGTGATTTGTGTTTTGGTGGACGAAGTTTGAATGAATCAGAGTTGGAAAGGTTAAAGCATGCTTTGATGCTTCTCTCAGAGGCTGAGAAACACTTGAGGACTTCTAGTGAACGCTCCACATGGTTCACAGCAACTCTATTACAGCTTGGTTCAATACCTTCTATAGATCTTTCTCAGTCAAGCAGCAGCAGGAGGCAGAGCAGCAAGACTTTCGAAGATGATCCATCAAGTGCTTCAAGAGAATTTACTGCTCGCAAGCATAATTCAGATGTTCAATATATGCCTCAAAAATCAACATCCCCTTCATCCCAGCAGAAAACTGTAATCGGCAATTCCAAACATAAAAAAGATATATTGTCAAAGTTAGATCATCTGATCTTGAGCTCAAAGCCATCAACAAGCCCAGCCATAAATGATGGCACGGTGCCTGCCTCAACTGATGATCCTGTTGTTGGGAATATGATGGTAAGATGCGTAAATTCAGGGAAGTTATATGATATCTGGGCATGTTGTATAGGGAGGTGTCACTCTAAGACACTGAGGCAGCTGCTACACAATCATGGACAACTTGTCTCCATTTGTGAAGTTGAAGGTGTTCTGGTTGCATATGTTGCATTCAGGGATGAAGATATTAAAATTAGGGCTGAAAGGTTTTTGAGTAGTATTACAAATTCGATGGAAATGGTACTTAGGCGCAATGTGGAGGTCAGGATTATCCACTTGCCAGGTGGTGAAGGTGAAAATCTGCGAGGTCTAAAGCAGGTGGAGTCAACTATGGCAAATGAGAAGGAAAAAAGAGGTGGCCATGCAAATGGAACAGATGGTTATTCTAGTTTTTCTCCTTTGCTGGATGGAAACTTGCAAGCTACCGCTGATTCATCTGATCTTATGGCTGAGGGAAATGCTGTGAGAGAGAATGGACAGGAAATTCCAACGCAGAGAATTGAATCTATTATTCGCGAGCAGAGACTGGAAACTGCCTGGCTACAGACTGTAGAAAAAGGCTCCCCAGGATCACTGACTCGTGTGAGACCCGAGAAGAATCAGGTCCTGCCTCAGGAAAATATCTACTGTAAAGACCCAATGGAGTCAATAGACTCAACGAAGTTTTCCTCTCAGCATTGGGAAGATGACCTCAATCGTGAAGTCAAAGTTTCGAATGGTAAAAGTGGAAGGGTCCTACAGAAGGGTCAGATTAGTAGAAGGGTAGACCGATGTCCCATGTCCCCAAGTTTATTGCACAATAGCAGTTTAACCACAAGTTCCAACAAAGACAACCTGGGATATGAATCAGGCGCAGGAGCTGGAGGTTGCAGTGGATTCTTATGTTGGAATAACACCAAGCAAAGAAGGGTAAAAGGTGCCCCAGTTGCAGCACATAAAGTTGGACCATTTTCATTATTCGGTGAGAAGTGTAAAGGTTATCTGGTTCAGGAGGAAGAACCTTCTCGAGAGGACGACGACGACGAGAGAAGTAGTGAAACAGCGGAAATGGCGAAGGGGCACACCGGTGAGTTTTTTAGGAGGAGGGACGGGTGGAGGAAGCATCCGATGCTTTCGAATCAACTCCGACACGCCACCCCTGGACTCGGCATCGCCCTTGTCGCCTTCGGCATCTACCTCGTCGGCGAACAAGTCTACAATCGGATCAATACTCCTTCGTCTCATCACTCTCAATCTTCTTCTTCTCATGCTTCTCACTGA 4020 0.4391 MRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLGSSRSMAAPSASGSAWKSNLENGSRRFSGNGKEKSVFLYNWKNHKSSSEKSGVAKNDSVEVEEDEVEEDEEEEEEDDDAGGNDASSSSLLGSFEDSLSDARNGCDSKSDSYLGGATRSSIFRCGDAKLVSSARRTMGIKKKSRKIKPHLDKLAKFQPRETNLSSKLVNSKTFLEGHPSMAYNREDDSIEQSDDNTEDYCNSEDLRRMSGASPLLFKLKHKNWSRSSSKLLRSSLKEDSSYSYSTPALSTSSYNRHGHHNPSTVASWDAATTSVNDGDDEVDDHLDLPGRRGCGIPCYWSKRTPKHRGICGSCYSPSLSETLRRKGSSIFCGSQTVYPRHRRSLSTSNKWRVSSRRAQSVLPLLTSSGDLRGGSSIGTGRSDDELSTNFGELYLEGLSRLDGRRWSSSCRSQDGLEIVAVDGEGDEEGTPENARSFSQKYKPTSFDELIGQNIVVQSLMNAVLRNRIAPIYLFQGPRGTGKTSTSRIFAAALNCMAPDASKPCGYCRECTDFISCKNRDLLEVDGTNKKGIDRVRYVLKRLSVESSSASSRYTVFVIDECHLLPSKTWLTFLRFLEEPPKQVVFIFITTDLDNVPRTILSRCQKYLFNKIKDGDIVARLRKISAKENLDVEMDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELLGVVSDEKLLELLELAMSSDTAETVKRAREVMDSVVDPMILMSQMASLIMDIIAGSYTVIDAKPGDLCFGGRSLNESELERLKHALMLLSEAEKHLRTSSERSTWFTATLLQLGSIPSIDLSQSSSSRRQSSKTFEDDPSSASREFTARKHNSDVQYMPQKSTSPSSQQKTVIGNSKHKKDILSKLDHLILSSKPSTSPAINDGTVPASTDDPVVGNMMVRCVNSGKLYDIWACCIGRCHSKTLRQLLHNHGQLVSICEVEGVLVAYVAFRDEDIKIRAERFLSSITNSMEMVLRRNVEVRIIHLPGGEGENLRGLKQVESTMANEKEKRGGHANGTDGYSSFSPLLDGNLQATADSSDLMAEGNAVRENGQEIPTQRIESIIREQRLETAWLQTVEKGSPGSLTRVRPEKNQVLPQENIYCKDPMESIDSTKFSSQHWEDDLNREVKVSNGKSGRVLQKGQISRRVDRCPMSPSLLHNSSLTTSSNKDNLGYESGAGAGGCSGFLCWNNTKQRRVKGAPVAAHKVGPFSLFGEKCKGYLVQEEEPSREDDDDERSSETAEMAKGHTGEFFRRRDGWRKHPMLSNQLRHATPGLGIALVAFGIYLVGEQVYNRINTPSSHHSQSSSSHASH 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1971 1339 Coils Coil 94 117 - -
Bisa04g1971 1339 CDD HLD_clamp_pol_III_gamma_tau 647 710 IPR045085 -
Bisa04g1971 1339 FunFam DNA polymerase III subunit gamma/tau 648 710 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 839 859 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 215 237 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 98 119 - -
Bisa04g1971 1339 SMART AAA_5 504 648 IPR003593 GO:0016887
Bisa04g1971 1339 Gene3D - 464 645 IPR027417 -
Bisa04g1971 1339 CDD AAA 486 644 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 1031 1056 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 29 64 - -
Bisa04g1971 1339 Pfam DNA polymerase III subunits gamma and tau domain III 701 762 IPR022754 GO:0003887
Bisa04g1971 1339 NCBIfam DNA polymerase III subunit gamma/tau 472 821 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 1265 1281 - -
Bisa04g1971 1339 Gene3D - 649 710 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 83 130 - -
Bisa04g1971 1339 Pfam NADH-ubiquinone oxidoreductase B12 subunit family 1281 1324 IPR012576 GO:0005739|GO:0022900
Bisa04g1971 1339 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 475 871 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 828 884 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 20 69 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 1250 1281 - -
Bisa04g1971 1339 FunFam DNA polymerase III subunit gamma/tau 468 646 - -
Bisa04g1971 1339 MobiDBLite consensus disorder prediction 861 881 - -
Bisa04g1971 1339 Pfam DNA polymerase III, delta subunit 487 647 - -
Bisa04g1971 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 694 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1971 Bisa-ChrBisa04 62023774 62034112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1971 468 776 Core DNA Replication Machinery Family AT1G21690 23.824 1.54e-15 77.8