Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1958 ATGGCCTCGAATCAGACATCTGGCGGAAACAATGCAGGGGCAACCAATGATGATTTATACAAGGAATTGTGGCATGCTTGTGCTGGTCCCCTTGTCACTCTTCCTCGTGAAGGCGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTCGAGGCATCTATGCATCAAGGATCAGACCAACAAATGCCTTCCTTTAATCTGCCTTCTAAAATTTTATGCAAAGTGGTCAATGTTCATCTACGGGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTTTGCTTCCCGAACAAGATCAAAGTGAGTTGAGTAGCCCGGATGATCCTCTGCCAGAACCTCCAAGGTGCACAGTGCATTCATTTTGCAAGACACTTACTGCCTCTGACACCAGCACCCATGGAGGATTTTCTGTTCTTCGAAGACATGCAGATGAATGTTTGCCACCTTTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGCAATGAGTGGCATTTTAGACATATTTTTCGAGGGCAACCTAGGCGCCACTTACTGACTACTGGATGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCCTGAGAGGTGAAAACGGGGAGCTGCGTGTTGGAGTTAGGAGGCTCATGAGACAACAAAATAACATGCCATCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCATATCATGCCATTAACACTGGAACGTTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGATCAGAGTTTATTGTGAGTGTGAACAAGTATCTTGAAGCTCGTAGTCACAAGTTTTCTGTTGGGATGAGATTCAAGATGAGGTTCGAGGGTGATGAAGTTCCTGAAAGAAGGTTTAGTGGTACAATTGTGGGTGTTGGAGATAATTTCTCACCTGTCTGGGCTAATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCATCTTCAATCTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGAATACTGCTCCTGCAAATTCCCAAACAACCCAAAGAAACAAGAGGGCGCGACCTCCTATTCTACCTTCAACAATGTCTGATTCTTTGCATGGTGTTTGGAAATCACCAGTTAAATCTCCACCTTTCCCTTATCGTGATCCCCAACATGGACGAGACCTCTATCCATCACCCAAGCTCAATTCTACTGCTACTAACTTTCTTGGTATTGGTGGGAATAGTCCACTGGGGGGTGTTTCTAACAATTCAACATATTGGTCTAATAGGATGGAGAACTCTATGGAGTCTGTAACCCCTAAAGAATCCAGTGAAAAGAGACAAAACACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGCTACTTGAAAATTCTAATGCAGAAGAAAGTATGCCGCCAGTCTCATTGTCAGGAAGGGTGGGAGATGATAGGTCTGTCCAGTATTTAGATGTTGAGACTGACCAGCATTCCGAGCCATCGAATGTTAATCGCGCAGATGTTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCTCCTCCTGAAGCACAAAGCAAGCAAATAAGGAGCTGCACAAAGGTTCACATGCAAGGAATGGCTGTTGGAAGGGCTGTGGATTTAACTCGGTTTGATGGATATGAGGATCTGCTTAAGAAACTAGAGGAGATGTTTGACATCAAGGGTGAGCTTTGTGGAACCAATAAAACATGGCAGGTTGTCTACACCGATAATGAAGATGATGTGATGATGGTTGGAGACATTCCATGGAATGAGTTCTGTGGTGCTGTGAGGAAAATCTTCATCTATACAGCAGAGGAGGTGAAGAGGCTTTCCCCCAAAGTCTTATTTTCGATCGGCGAAGAACCTAAAACAAGCAAGCTTGATTCTGAAGCATTTGTCAATGCTGATGAGCAGGAGCAGTCATCCATTGTGGGGCTGGGTTGCTAA 2016 0.4435 MASNQTSGGNNAGATNDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGSDQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEQDQSELSSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATAYHAINTGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKFSVGMRFKMRFEGDEVPERRFSGTIVGVGDNFSPVWANSEWRSLKVQWDEPSSILRPDRVSPWELEPLVNTAPANSQTTQRNKRARPPILPSTMSDSLHGVWKSPVKSPPFPYRDPQHGRDLYPSPKLNSTATNFLGIGGNSPLGGVSNNSTYWSNRMENSMESVTPKESSEKRQNTGNGCRLFGIQLLENSNAEESMPPVSLSGRVGDDRSVQYLDVETDQHSEPSNVNRADVPSVSCDAEKSCLQSPPEAQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLKKLEEMFDIKGELCGTNKTWQVVYTDNEDDVMMVGDIPWNEFCGAVRKIFIYTAEEVKRLSPKVLFSIGEEPKTSKLDSEAFVNADEQEQSSIVGLGC 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1958 671 Gene3D - 287 360 - -
Bisa04g1958 671 FunFam Auxin response factor 540 634 - -
Bisa04g1958 671 ProSiteProfiles PB1 domain profile. 545 638 IPR000270 GO:0005515
Bisa04g1958 671 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Bisa04g1958 671 Pfam AUX/IAA family 542 635 IPR033389 -
Bisa04g1958 671 SUPERFAMILY DNA-binding pseudobarrel domain 113 253 IPR015300 -
Bisa04g1958 671 SUPERFAMILY CAD & PB1 domains 547 622 - -
Bisa04g1958 671 SMART B3_2 124 226 IPR003340 GO:0003677
Bisa04g1958 671 Pfam Auxin response factor 250 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa04g1958 671 Gene3D - 121 226 IPR015300 -
Bisa04g1958 671 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Bisa04g1958 671 Gene3D - 540 634 - -
Bisa04g1958 671 CDD B3_DNA 122 224 IPR003340 GO:0003677
Bisa04g1958 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 634 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa04g1958 671 MobiDBLite consensus disorder prediction 357 373 - -
Bisa04g1958 671 MobiDBLite consensus disorder prediction 357 388 - -
Bisa04g1958 671 FunFam Auxin response factor 122 226 - -
Bisa04g1958 671 FunFam Auxin response factor 287 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1958 Bisa-ChrBisa04 61745456 61751373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1958 1 668 B3 DNA Binding Superfamily AT1G59750 68.648 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa04g1958 AUX_IAA 6.1e-14 CL0072