LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa04g1917	ATGGAGGGTCAATATCTGCAAATGAATTTACATACTGGCAAGGCATGTGTTCTTCCCAAAAGGGAAAAGCTAGAGCCATTTGGCAAAACAGAGCCACTTCATTGTCCCAAAGCAGAACAGGTGGGGTCATTTGCAAAAATGGTGCCGCTTGATTTCGCCAAAACCAAGACAGCGAAGTTGTTTGGCCAACCACTGTTTGAATCCAATGAAGAAAGAAAGCATATACTGTTGCGTTTGGGGAGGATAAGAGATTTCATCAGCCTCTTGTTGAGTTACCCCATGAGAACAGTGCATGACAGCAAACTTAAAGTTTGGGCTCTTGAGCTTTTGAATGGGAAACATTTGAGAGCAGATTTACTTAGTCTACTGAATGAGAAGCCCCTTGAATGCTTGGAAGGACTTATACCGAGGGAAATATTAGAGAACATTGAAGCAGGTCGGAGTTTCATGTTTGTTGATGAAGAAGTGAAACCAGAAAGGATTTTCACTACTTCAACCACTGATCGTGCGGTTGATCAGCTGCTTCAAACTTTACTTTCTGGTGATGATGATCATGTACGCAAGATTCATCGTATCATGTTATGTACTAGAGATGGAGTTGAAAAAAGGGATCACCTAAATTCCACTTCATTATTAAATCGCATCATAACAGACGAGCCATTACAAACTTTTAGTGAGAGGATCTTCAAGGACCAAAAGCAAAATGCATACGGAAAAAGGGAGACTATGCCAAGGTGGACAATTGAAGGGCCCGCAGATGATGGATTCAGTTGGAGGAAATATGGTCAAAAAGACATTCTAGGAGCCAAATATCCGAGATGCTATTATAGATGCACTTTTAGAAATACAAGAGGATGCTATGCCACAAAGCAAGTGCAAAGAACAGATGAAGACCCAACTGTCTTTATAACCACTTATAGAAGAAGACACACTTGCATACGAGAATCCATTGGTGATGAATCTCTTTCCAAAGAAGCCTCCTCTGATGACTCCACTGTCACAGAAAATTTTACTTCTAAGGGAAAGCAAATTTCAACACCTGATGACTTTGACATGATGACTCAAGTAGGGACAGACGATGATAATATTGACGTTGATTCAGGAGGACTATCAATATCTGATATGGATTTTATAGCAGGTGGGACAGTGGTTGAGCCATTACAGCCTTGCAGAGAGAGGATCTCCTTTAAGGGCAGGCGACGTACCCACAAGAGGAGAATGACTGCAGCAACGTGGGTAAAAGAAACAAACAGTCTTGATGATGATGGACACAGTTGGAGGAAATATGGCCAGAAAGATATTCTTAATACAAAATATCCAAGATTCTATTACAGATGCGCTCAGGGTTGTCTAGCAGTCAAACAAGTGCAGAGAATTCAAGAGGATCCTCCCTTGTACAGGACCACCTATATTAACAAGCACACCTGCCAAAACCTTCTGGAGATTCTTCCAGCCAAACTAGACCAGTACTCCCCTTTCTCATCATCTCATCCCCGAGTGAAAGAAGAGGCTGAGGAAGAGGTTCTTATAACTTTTCCCGACTGTTTCAGCATCTTCCCTAAACCCACTTCGGATGATGACTTCTACGTTGAGCCCTTCATATTTTGA	1608	0.4185	MEGQYLQMNLHTGKACVLPKREKLEPFGKTEPLHCPKAEQVGSFAKMVPLDFAKTKTAKLFGQPLFESNEERKHILLRLGRIRDFISLLLSYPMRTVHDSKLKVWALELLNGKHLRADLLSLLNEKPLECLEGLIPREILENIEAGRSFMFVDEEVKPERIFTTSTTDRAVDQLLQTLLSGDDDHVRKIHRIMLCTRDGVEKRDHLNSTSLLNRIITDEPLQTFSERIFKDQKQNAYGKRETMPRWTIEGPADDGFSWRKYGQKDILGAKYPRCYYRCTFRNTRGCYATKQVQRTDEDPTVFITTYRRRHTCIRESIGDESLSKEASSDDSTVTENFTSKGKQISTPDDFDMMTQVGTDDDNIDVDSGGLSISDMDFIAGGTVVEPLQPCRERISFKGRRRTHKRRMTAATWVKETNSLDDDGHSWRKYGQKDILNTKYPRFYYRCAQGCLAVKQVQRIQEDPPLYRTTYINKHTCQNLLEILPAKLDQYSPFSSSHPRVKEEAEEEVLITFPDCFSIFPKPTSDDDFYVEPFIF	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa04g1917	535	ProSiteProfiles	WRKY domain profile.	247	310	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa04g1917	535	SMART	WRKY_cls	252	314	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa04g1917	535	SMART	WRKY_cls	420	478	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa04g1917	535	Gene3D	WRKY domain	406	478	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa04g1917	535	MobiDBLite	consensus disorder prediction	320	344	-	-
	Bisa04g1917	535	ProSiteProfiles	WRKY domain profile.	415	474	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa04g1917	535	Pfam	WRKY DNA -binding domain	421	477	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa04g1917	535	Pfam	WRKY DNA -binding domain	253	312	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa04g1917	535	Gene3D	WRKY domain	238	307	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa04g1917	535	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	398	477	IPR044810	GO:0003700
	Bisa04g1917	535	MobiDBLite	consensus disorder prediction	327	344	-	-
	Bisa04g1917	535	SUPERFAMILY	WRKY DNA-binding domain	416	477	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa04g1917	535	SUPERFAMILY	WRKY DNA-binding domain	250	312	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa04g1917	Bisa-ChrBisa04	59489043	59493642	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa04g1917	421	486	WRKY Transcription Factor Family	AT4G11070	54.286	2.24e-15	74.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Bisa04g1917		WRKY	5.4e-24	CL0274