Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1883 ATGGAGTGTCCCCAAAGTATTTGTGAAGGCCGAGCTCCGGTGGACCACTACCGCGTCGCACCGTCGCGTCCCGCCGCGCCGGCGACGTTAAAACCAGCTAGTCGGCCAGTGAGCTCCGTCGTCCTCAGTCCTAATCGGCGCACGGCAGCTCAGCTGAGTGTAGTACTTCAGCATCCTTTTGGTCCTAGCCAGTGGCAACCTTCTTCTGCACTGCTCTGTTCAAGGAGGAGGCAAGAAAGAAAAAACAGAGTCACATACAAAATTGAGGATTTTGGAAGAATTAAGGGTTTACGGCCAGTGAATTATTTGAAAATGGACGGATCAACTTGGCAAGGTGGCAACGGTAGGCATGAGGCTTTGTCAAATTACTGGTTGGGAGGAACAATTGGAGTTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCATGTATTGACTGGCCATAAAGTGGCTGTTAAGATCCTTAAAATGGAGAAGTTAAAGGAATTGGGAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTAATCACGCATCCTCACATCATACGACTTTATGAGGTCTTAGAAACGCCAACATACATATATGTTGTCATGGAGTATGTAAATTCCGGGGAGCTCTTTGATTACATAATACAAAAAGGCAGGGTGGCAGAAGATAAAGCCCGCCATTTTTTCCAGCAGATAATCTCTGGCGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACTTGAAGCCTGAGAATATACTTTTGGACACCAAATACAACCTCAAGATTGCTGATTTTGGTTTGAGCAACATCATGCGCGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCAAACTATGCTGCTCCAGAGGTTATATCTGGAGATTTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGCACTCTTCCTTTTGATGAGCCAAACGTTAATTTCCTTTATAACAAAATAAAGTGTGGGATTTATACTCTTCCTAGTCATCTGTCATCCGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTTGATCCTATAAAGAGGTTGACCATACCTGATATTCGCCGACACCCGTGGTTCCAAGAACATCTCCCCCGTTATTTAGCAGTGCCACCACCAGATACAATGCAACAAGCCAGAAAGATTGACGAGGAAATTCTTCAGGAAGTGGTTACTATGGGGTTCGACAGGAATCAATTGGTTGAATCTCTCTGCAACCGTATACAAAATGAGGATGTTCATCCCCAAGAAGATGCTGCTCCAGTGGTTGCTCACCCCTCTCCAAGGTATAGGGATTCTCAAGGATTGAGATCGCAGCTTCCAGGAAAATGGGAGCTTGGGGTTCAGTCTTCCGCTCATCCATCCAAAATAATGAATGACGTCCTTACAAATCTGAAAGAATTAAATGTGTTCTGGAAAAAAATAGGACACTACAACATGAAGTGCAGGTGGATTTATGGCAATGGTGCTACTTCTAAGTCAAATGTGATCAAGTTTGAAATTCAGCTTTACAAATCTCAGGAAGAAGGATACGTGCTTGATCTTCAAAGATTGGAGGGTCCACCATTCCTGTTTTTGGATCTCTGTGCTGCTTTCCTTACAAAGCTTCGTATATAG 1662 0.4386 MECPQSICEGRAPVDHYRVAPSRPAAPATLKPASRPVSSVVLSPNRRTAAQLSVVLQHPFGPSQWQPSSALLCSRRRQERKNRVTYKIEDFGRIKGLRPVNYLKMDGSTWQGGNGRHEALSNYWLGGTIGVGSFGKVKIAEHVLTGHKVAVKILKMEKLKELGMEEKVRREIKILRLITHPHIIRLYEVLETPTYIYVVMEYVNSGELFDYIIQKGRVAEDKARHFFQQIISGVEYCHRNMVVHRDLKPENILLDTKYNLKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGDLYAGPEVDVWSCGVILYALLCGTLPFDEPNVNFLYNKIKCGIYTLPSHLSSGARDLIPRMLVVDPIKRLTIPDIRRHPWFQEHLPRYLAVPPPDTMQQARKIDEEILQEVVTMGFDRNQLVESLCNRIQNEDVHPQEDAAPVVAHPSPRYRDSQGLRSQLPGKWELGVQSSAHPSKIMNDVLTNLKELNVFWKKIGHYNMKCRWIYGNGATSKSNVIKFEIQLYKSQEEGYVLDLQRLEGPPFLFLDLCAAFLTKLRI 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1883 553 SUPERFAMILY Protein kinase-like (PK-like) 119 397 IPR011009 -
Bisa04g1883 553 Pfam UBA/TS-N domain 397 427 IPR015940 -
Bisa04g1883 553 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 78 413 - -
Bisa04g1883 553 SMART serkin_6 123 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa04g1883 553 CDD AMPKA_C 458 551 - -
Bisa04g1883 553 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 396 428 IPR015940 -
Bisa04g1883 553 CDD UBA_SnRK1_plant 397 426 - -
Bisa04g1883 553 SUPERFAMILY KA1-like 435 552 IPR028375 -
Bisa04g1883 553 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 505 553 IPR001772 -
Bisa04g1883 553 FunFam Non-specific serine/threonine protein kinase 462 552 - -
Bisa04g1883 553 Gene3D Transferase(Phosphotransferase) domain 1 114 438 - -
Bisa04g1883 553 FunFam Serine/threonine-protein kinase ppk25 117 377 - -
Bisa04g1883 553 Pfam Kinase associated domain 1 511 552 IPR001772 -
Bisa04g1883 553 MobiDBLite consensus disorder prediction 432 451 - -
Bisa04g1883 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Bisa04g1883 553 Gene3D Kinase associated domain 1, KA1 462 552 - -
Bisa04g1883 553 ProSiteProfiles Protein kinase domain profile. 123 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa04g1883 553 CDD STKc_AMPK_alpha 120 375 - -
Bisa04g1883 553 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Bisa04g1883 553 FunFam Non-specific serine/threonine protein kinase 110 204 - -
Bisa04g1883 553 Pfam Protein kinase domain 127 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1883 Bisa-ChrBisa04 58811585 58819691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1883 120 517 CBL-interacting serine-threonine protein kinases AT4G24400 39.024 2.16e-88 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Bisa04g1883 Pkinase 1.2e-77 CL0016