Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1811 ATGCCACGCCCGCGTTGTTTTGAAGATCGCGCCCTCCTTTGCTCACTCTTCTTCTTCGTTTCCCTCTCGTCGCTCATCGCCGTTCTCCACCGTCTCTGGCAGTTATTAATCGCGCAACTCTGGGAAATAGCAAGCTTCTTCTTCACAGGGGATTCATATGCACGTGAAACTATCAGAAAAGTTGAATTTTATCTGCGGTCATCGTGTTTGTGTGTAGGAACGCGTCAAACCGTTGCAGCAGATGATGAGTTCCCTAGAGTTAATTGGTTGCAACATGCCAGTGCACATGAGAACTTTTCATGTCAAAAGAGGTTCTTGGCTTCAAATTTTCTTTTCTCCTTGCCAACTCAGAAACCTTGCTCTGAAGAACCCATGGGTAGGAGATTTGTAGTCAATCAAAATCAAAACATTCAATCTTTGCAGAAAGCACAAGTTGAAAAGGCTTGGCGTGCCCTTTCGAGTTTACAGAATTCTCATAGGAAATATGCCAAACCTGGAAAAACTATACAAATTAGTCCTCCACTTCATGCAGACAAGAGAACAAGTGCCTTGTCAAGAAGCTCTGAGAATGGCAGATACTCTCCAAATTTGCAAAATTATAGAGTCTTCAGTGAAAACAACGCCAAATCTAATCAATATTTTTCATCAAGTAATTCTAGAGCTGAAGATGGAGGGCACAGTTTGAGGCGCCCTGATGACATGAGAATTCCAACAGTCAATAATCCTCAAGTTTTGGATGATTCAGTGGATAATTGTACTAAGTTCACTGCTAAAGTTAACGAGTCTACAAATTGTATGGCTGGCAACATTGATGATGATGACATACTTGAGAACATTGATGTTGACCAAATAGTGGAAAACTACCAGTCAAGTTGCACTCCTCAGCCATCCATAACCAAGCTTCCTCCTATTTCTCCAACTATTGATACAAACAGTTTTGCTAGACAAGGCAAAAATAATTTGCCTCCAGAGTTGTGCTCAGATTGCATTCATGGTTACAAGGTAGGGCTTTGCCCTGAAGCAGCAAACCATTTGCAGGAATGGAAGGACAATCTGATTGCTATCTCCAATGAACTGCTTGACAATGTTGACAATCTCAGTTCTGAGCAGATTGCAAAGCTTCGCCAAGACAGGTCACAGCTAAATAAGCAAATTCAGCTGCTTGAAAGGCATATCCATTCCAGTAAGCTTGATGAGGAAAGACAAAAGTCACATTTTTCTGCGTCCACGGCACCTCATACTTCTTTTCACTTTGAAACACCACAGCAAGCTGTCCTTAAAAGCGGACCATTGAGATATGATGCCCCAGTTTTTGTTAGTAGTGAGCCATGTGGGCCACTATTCCAGTCATTTTCATCCTCTTCTGTAGATAAGTACGGTATGTCATTGGGTCCAGTGGAGAGAGAATCATTCATTCCAAGGAATATTGAAGTTAATTACATTGAAGGTTCTGGAGATAAACACTGGAGCGACCAAAATTTCCCTTGGACAAAAAAGTTGGAGGCCAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTCTTAATGCCAACAGGTGGAGGGAAGAGTCTGACCTATCAGCTCCCTGCCCTTATTTGTCCAGGAATAACACTAGTAATCTCTCCACTTGTGTCCCTTATTCAAGATCAAATAATGCATCTACTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTTAGAGAAATGAATTCTGATTGTTGTAAATACAAGTTGTTATATGTAACACCAGAAAAGGTTGCCAAAAGCGATGTTCTTCTGCGAAATTTGGAGAGTTTACATGTTCGTGAGTTGCTTGCTAGAATTGTAATTGATGAAGCTCATTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGGCTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTCTTGGCTTTAACGGCTACAGCAACAGCCAGTGTAAAAGAAGATGTCGTTCAAGCTCTCGGCCTCATCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTATCCCCAAGACAAAGAAGTGTTTGGAAGACATTGACAAATTCATCAGGGAAAATCATTTTGATGAATGTGGCATTATTTATTGTCTCTCACGAATGGACTGTGAAAAAGTTGCTGAAAAATTGCAGGAATATGGACACAAAACTGCATTTTATCATGGTAGCATGGATCATGCTCAACGAGCCTTTGTTCAAAAGCAATGGAGTAAAGATGAAATCAATATAATTTGTGCCACTGTGGCATTCGGAATGGGTATTAATAAACCTGATGTTCGTTTTGTAATTCATCATTCTCTCCCAAAATCAATTGAAGGCTACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTATAGCTATAGCGACTATATACGAGTTAAGCACATGATAAGTCAAGGAGCAATGGAGCAAAGTTCCATGACATCTGCTTACAATCGTTCAAATTTGACAAATTCAGGGAGTATACTGGAAACTAATACTGAAAACCTTTTGCGAATGGTAAGTTATTGTGAAAATGATGTTGATTGTCGAAGACTTCTGCAGCTTGCTCATTTTGGGGAGAGGTTTGATTCTGCGACCTGTAAGAAAACATGTGACAATTGTTTGAGGATCAAAAGTTTTATTGAGAAGGATGTCACAGAGATCGCAAAGCAATTGGTTGAACTAGTTAAGCTAACAGGGCAGAAGTTCTCATCATCTCACATATTAGAAGTGTACCGTGGTTCCATGAGCCAGTTTGTCAAGAAACACCGGCATGAAACTGTACGCCTTCATGGTGCTGGGAAGCATCTGGCTAAGGGTGAGGCTTCCCGCGTATTGCATCATCTTGTTGTTGAGGATTTTCTTGTGGAGGAAGTAAAGAAAAGTGATATTTATGGATCAGTCTCATCAGTATTAAAGGTAAATGAGCCCAAGGTCCGTAATCTGTTGTTTGGTGGGCGGAGAATTGTATTAAGATTTCCTTCCTCAGCGAAAGCTTCAAAGCTGGGAATATCTGACCTAACTCCAGCTAAAGGCTCTCTGACATCTGGAAAGCCGAATCTTCCACAAAATGACACTTCTACTGCCCAGCCCCAAACTGAAGTAGACTTGACTCTTTCAGCTAAGTTGTACACTGCCCTGCGGATGCTGCGGACAGCTATTGTGCGAGATGCAGGAGAGGGTGTTATGGCTTACCACATATTTGGTAATGCTACGCTGCAGCAGATAAGCAAGAGAGTGCCCAGAACAAAGGAAGAACTCCTTGAGGTCAATGGCATTGGCAAGGCTAAGGTAAGCAAATATGGAGATCGGTTACTGGAAACCATTGAAAATACCATAAGGGAGTATTATAAATTAGACAGAAACGACAGTGGGAGCAATGAGAGTACTGACTCTGCGAAAAGGAGACGACAGTCAAATGGAGACCCTAATGCAAATACGGATGATGGTGAATTTACCAAAACTACTGGTCGCTCAAAGAAAAGGACGATAAAGAGGCAGAATAAAAAATCTCTGGTTTATGATTCTGCTGAGGAAGATTGTTACAAAGATTGCTTAGATGATGGCCTAGATTTTGACAATATAGAAAATGCTGCACTGGATGAAATAAATCGTAGGAATTCTGAAGGAAGAGCCCTACCTCAATGGACATCATCTTGA 3795 0.4124 MPRPRCFEDRALLCSLFFFVSLSSLIAVLHRLWQLLIAQLWEIASFFFTGDSYARETIRKVEFYLRSSCLCVGTRQTVAADDEFPRVNWLQHASAHENFSCQKRFLASNFLFSLPTQKPCSEEPMGRRFVVNQNQNIQSLQKAQVEKAWRALSSLQNSHRKYAKPGKTIQISPPLHADKRTSALSRSSENGRYSPNLQNYRVFSENNAKSNQYFSSSNSRAEDGGHSLRRPDDMRIPTVNNPQVLDDSVDNCTKFTAKVNESTNCMAGNIDDDDILENIDVDQIVENYQSSCTPQPSITKLPPISPTIDTNSFARQGKNNLPPELCSDCIHGYKVGLCPEAANHLQEWKDNLIAISNELLDNVDNLSSEQIAKLRQDRSQLNKQIQLLERHIHSSKLDEERQKSHFSASTAPHTSFHFETPQQAVLKSGPLRYDAPVFVSSEPCGPLFQSFSSSSVDKYGMSLGPVERESFIPRNIEVNYIEGSGDKHWSDQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILREMNSDCCKYKLLYVTPEKVAKSDVLLRNLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLINCIVFRQSFNRPNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQEYGHKTAFYHGSMDHAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGAMEQSSMTSAYNRSNLTNSGSILETNTENLLRMVSYCENDVDCRRLLQLAHFGERFDSATCKKTCDNCLRIKSFIEKDVTEIAKQLVELVKLTGQKFSSSHILEVYRGSMSQFVKKHRHETVRLHGAGKHLAKGEASRVLHHLVVEDFLVEEVKKSDIYGSVSSVLKVNEPKVRNLLFGGRRIVLRFPSSAKASKLGISDLTPAKGSLTSGKPNLPQNDTSTAQPQTEVDLTLSAKLYTALRMLRTAIVRDAGEGVMAYHIFGNATLQQISKRVPRTKEELLEVNGIGKAKVSKYGDRLLETIENTIREYYKLDRNDSGSNESTDSAKRRRQSNGDPNANTDDGEFTKTTGRSKKRTIKRQNKKSLVYDSAEEDCYKDCLDDGLDFDNIENAALDEINRRNSEGRALPQWTSS 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1811 1264 Gene3D HRDC domain 1079 1165 IPR044876 -
Bisa04g1811 1264 Gene3D - 476 703 IPR027417 -
Bisa04g1811 1264 Gene3D - 927 1037 IPR036388 -
Bisa04g1811 1264 Gene3D - 704 922 IPR027417 -
Bisa04g1811 1264 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 521 696 IPR014001 -
Bisa04g1811 1264 SMART RQC_2 929 1040 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bisa04g1811 1264 MobiDBLite consensus disorder prediction 1165 1187 - -
Bisa04g1811 1264 ProSiteProfiles Rhodanese domain profile. 736 778 IPR001763 -
Bisa04g1811 1264 SMART hrdc7 1082 1164 IPR002121 GO:0003676
Bisa04g1811 1264 Pfam Helicase conserved C-terminal domain 720 826 IPR001650 -
Bisa04g1811 1264 CDD DEXHc_RecQ 501 703 - -
Bisa04g1811 1264 PANTHER DNA HELICASE RECQ FAMILY MEMBER 484 1174 - -
Bisa04g1811 1264 CDD SF2_C_RecQ 704 836 - -
Bisa04g1811 1264 Pfam DEAD/DEAH box helicase 515 683 IPR011545 GO:0003676|GO:0005524
Bisa04g1811 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 845 IPR027417 -
Bisa04g1811 1264 FunFam Bloom syndrome, RecQ helicase 704 924 - -
Bisa04g1811 1264 ProSiteProfiles HRDC domain profile. 1082 1164 IPR002121 GO:0003676
Bisa04g1811 1264 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 721 882 IPR001650 -
Bisa04g1811 1264 SMART ultradead3 509 712 IPR014001 -
Bisa04g1811 1264 MobiDBLite consensus disorder prediction 1054 1075 - -
Bisa04g1811 1264 FunFam ATP-dependent DNA helicase RecQ 486 703 - -
Bisa04g1811 1264 NCBIfam RecQ family ATP-dependent DNA helicase 505 980 IPR004589 GO:0004386|GO:0006310
Bisa04g1811 1264 SUPERFAMILY HRDC-like 1085 1157 IPR010997 GO:0000166|GO:0044237
Bisa04g1811 1264 Coils Coil 371 391 - -
Bisa04g1811 1264 Pfam RQC domain 926 1043 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bisa04g1811 1264 MobiDBLite consensus disorder prediction 211 243 - -
Bisa04g1811 1264 SMART helicmild6 746 827 IPR001650 -
Bisa04g1811 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 970 IPR027417 -
Bisa04g1811 1264 Pfam RecQ zinc-binding 838 920 IPR032284 -
Bisa04g1811 1264 MobiDBLite consensus disorder prediction 1165 1215 - -
Bisa04g1811 1264 Pfam HRDC domain 1086 1154 IPR002121 GO:0003676
Bisa04g1811 1264 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 635 644 IPR002464 -
Bisa04g1811 1264 FunFam ATP-dependent DNA helicase Q-like 4A 1078 1164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1811 Bisa-ChrBisa04 55985438 55994955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1811 735 850 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 6.85e-08 54.7