LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa04g1787	ATGGAGCACCCTAAAACCAAAACCCTAAAAAGGCTACACCATTTCAAACCAAGGTCCCATTTTGAAGAAATCAACTACCCACAAAAACCCATCCTTGAATCAGAAGAACACCACCCTTTGAATTCCCACTCGGAAAACCCTAATTACTCCACCACGTGCACGACCGACGATGACGCAGAAGAAGAAGAAGAAGAGTGGCTCGAATACAGCAAAGGCGTGGAGGAAAGCATCGAAAAGTACAGAAAGAAGAGGAAAAGGAGGATGAAGAAGAGGGCTATAATAGAATGGAGTTTGTTCCTCATCATCATGACCTGCTTCGTGTGCTCTCTCACCATAGAGTCCCTCCGGAATAGGCTCCAGTGGGGGCTTCACGTGTGGAAGTGGTGCCTAATGGTGATGGTCATCTTCTGTGGGCGTCTCGTGTCTGGTTGGGTGGTGAGACTCGCAGTGTTCTTCATTGAACGTAACTTCATGCTGCGAGAGAAGGTCCTTTACTTCGTGTATGGCCTGAGAAAGAGCTTCCAAAACTGCGTGTGGCTAGGTCTTGTGTTAGTGGCATGGATGCTCATGTTCCATGACGTCCACAGGCGTCACAAGGTTATCAAGAAGTTCTTCAGAGCCCTCGTCGCCGTCCTCATGGGCGCCACCCTCTGGTTGCTCAAAATAGTTTTTGTCAAAGTTCTCGCGACGTCATTCCACGTGGCGACTTTCTTTGATAGGATGAAAGAGAGCGTCTTCCACCACTATGTCCTCGAGGCGCTCTCCAGGCCCCCCTTGGACGACGCCGATCAGGATCTGCCAAGTCAGCAAAGGCACATGCAAGCGTCCAAGTCTTTGCCTGCGAGGCTCAGGGGCGGGACCGAGGAGGATAGACATGGAGAAGCTGAAGAGGCTGAGCATGGAAGGGCGGGCGACAGCGTGGAGCGTGAGGAGGTTAGTGAGTCACTGATGTCGTCAGGGCTGTCAACAATTTCGAGGACCGTTGATGACTTCGCAAACGCCAAGTCGGAGATTACAAGCGAGTGGGAGGCAAGGACTTGCACTCAGAGGATATTCAAGAATGTTGCCAAGGATGGAGCCAACAGTGTGCATCTGGAGACTGGAGGCGCACTTGTGCATGCTTCTTAACTTCTTGATGAGGAGGAATTTGGGGAGGCAGCAGAATCCTTAACTTACGATGAAAATTCGTCAAATTCAGCAATGGAGCTTGGCCTATTGTTACCACCAACTTTACCTGTAGTTAAACAATCAGTTGCTGCTGGTGTACCTGAGAGCTCCGAACCTCCTCAAGGGGCTCAAGCTGCAGAGAAGCCCTGTAATTTGAACGAGTTACCATCTGGATTCATGGGTAAATTGCTAGTATACAGAAGTGATGCAGTTTCGTCAGGTGTTAGTAGTGTGTTTGCTCAAGATGTTGTTGCGGTCAATACAGCTGAAAAGCATTGTTGCACTGTTGGAGAGATCAGCAAGCATGCCACTATAACCCCAGACATAGATGCCATATTAGACAGTATGGCTCATTTATGA	1527	0.4931	MEHPKTKTLKRLHHFKPRSHFEEINYPQKPILESEEHHPLNSHSENPNYSTTCTTDDDAEEEEEEWLEYSKGVEESIEKYRKKRKRRMKKRAIIEWSLFLIIMTCFVCSLTIESLRNRLQWGLHVWKWCLMVMVIFCGRLVSGWVVRLAVFFIERNFMLREKVLYFVYGLRKSFQNCVWLGLVLVAWMLMFHDVHRRHKVIKKFFRALVAVLMGATLWLLKIVFVKVLATSFHVATFFDRMKESVFHHYVLEALSRPPLDDADQDLPSQQRHMQASKSLPARLRGGTEEDRHGEAEEAEHGRAGDSVEREEVSESLMSSGLSTISRTVDDFANAKSEITSEWEARTCTQRIFKNVAKDGANSVHLETGGALVHASXLLDEEEFGEAAESLTYDENSSNSAMELGLLLPPTLPVVKQSVAAGVPESSEPPQGAQAAEKPCNLNELPSGFMGKLLVYRSDAVSSGVSSVFAQDVVAVNTAEKHCCTVGEISKHATITPDIDAILDSMAHL	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa04g1787	508	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	15	366	IPR016688	-
	Bisa04g1787	508	MobiDBLite	consensus disorder prediction	283	312	-	-
	Bisa04g1787	508	MobiDBLite	consensus disorder prediction	26	55	-	-
	Bisa04g1787	508	MobiDBLite	consensus disorder prediction	260	318	-	-
	Bisa04g1787	508	MobiDBLite	consensus disorder prediction	26	42	-	-
	Bisa04g1787	508	Pfam	RNA polymerase III RPC4	423	498	IPR007811	GO:0003677\|GO:0005666\|GO:0006383

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa04g1787	Bisa-ChrBisa04	55280893	55288965	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa04g1787	7	366	Mechanosensitive Ion Channel Family	AT5G12080	38.918	1.61e-67	229