Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1715 ATGCGTCTAACTTCTAGCGAACCACCGCTTAAAATGCCAGAAGTGGAGGAGTATCGCTGCTTCATCGGGGGCCTTTCATGGTCAACATCTGACAGCAAGCTAAAGGATTCATTTGAAAAGTTTGGAAAGCTTCTTGAGGCAAAGGTGGCTGTTGATAAGTTCTCTGGTCGCTCTCGTGGTTTTGGATTTGTAACATTTGATGATGAGAAAGCAATGGAAGATGCTATTGAGGCTATGAACGGGATGGATTTAGATGGTCGAACTATTACTGTTGATAAAGCTAAACCTCAACAGGGATCAACTAGAGATGATGGTGATCGCTACCGAGAACGTGGTCGTGATCGCAATTCTAACCGAGACTATGGAGGTAGCCGAGGATCTAGTGGTGGTGGATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCTGATGAAGGGTCAAGAGGTGGAAGGTATGGTGGCAGGGACAGTAGATATGGTGGCAGTAGTGGTGGGGGTCGCTATGGTCCTGATAGGACTGGTGATCGATCTTCTGGTGGGCGCAACAGGGATTCTGGTAGTCATGGAGATTCTGGAAGTAGTCGGAGGCTCTCGTTCTGGATAGAATTTATTATTCTCATTGAGGTTTAA 639 0.4632 MRLTSSEPPLKMPEVEEYRCFIGGLSWSTSDSKLKDSFEKFGKLLEAKVAVDKFSGRSRGFGFVTFDDEKAMEDAIEAMNGMDLDGRTITVDKAKPQQGSTRDDGDRYRERGRDRNSNRDYGGSRGSSGGGCFKCGKPGHFARECPDEGSRGGRYGGRDSRYGGSSGGGRYGPDRTGDRSSGGRNRDSGSHGDSGSSRRLSFWIEFIILIEV 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1715 212 MobiDBLite consensus disorder prediction 143 197 - -
Bisa04g1715 212 ProSiteProfiles Zinc finger CCHC-type profile. 132 147 IPR001878 GO:0003676|GO:0008270
Bisa04g1715 212 MobiDBLite consensus disorder prediction 87 129 - -
Bisa04g1715 212 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 12 198 - -
Bisa04g1715 212 SUPERFAMILY Retrovirus zinc finger-like domains 124 150 IPR036875 GO:0003676|GO:0008270
Bisa04g1715 212 Gene3D - 5 127 IPR012677 -
Bisa04g1715 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Bisa04g1715 212 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Bisa04g1715 212 Gene3D - 128 188 - -
Bisa04g1715 212 MobiDBLite consensus disorder prediction 97 120 - -
Bisa04g1715 212 SMART rrm1_1 19 92 IPR000504 GO:0003723
Bisa04g1715 212 SUPERFAMILY RNA-binding domain, RBD 8 126 IPR035979 GO:0003676
Bisa04g1715 212 Pfam Zinc knuckle 131 146 IPR001878 GO:0003676|GO:0008270
Bisa04g1715 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Bisa04g1715 212 CDD RRM2_NsCP33_like 19 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1715 Bisa-ChrBisa04 53852071 53854993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1715 20 91 Eukaryotic Initiation Factors Gene Family AT4G34110 41.667 4.64e-12 62.8