Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1588 ATGGGGCTTCATCACAGGAAGATTCAAGAAGAAATCTGCACTCTCGTCTGCCATCTCAAGGACTCGTCTTTTTCCCACGCAGACGGCCACACCTGCGTTGAGAGCTGCACCAACGTAACCACACCTATTTACTTCCCTCCACCGTCTCCTCCGATCTACATCGATCCAGATCTCGGAACCCCATCAAAAGCCCACCAGATTTCAATCGTCTTGATACTCGTCGTCTCTTTCCTCGCCGTCGCCTTCTTCGCCGTCTGCTGCTATGCCCTCTACGCCGGATTCTTCAGAAAGCGGAGGAGTTCTCCAGAAACAGAGGAAGAAAACACACGCGGCGATTTTCTGGATGGGGAACACGGACCTATGTTGGACCACCCGATATGGTATATTCGAACCACGGGTCTTCAACAATCGGTGATATCTGCGATTACGATTTGTAAATACAAGAAAGGTGAGGGCTTGATCGATGGAACAGAGTGCTCTGTTTGTCTGAGTGAGTTCGAGGAAGACGAGAATCTCAGGCTTTTACCCAAGTGTAACCACGCTTTTCACCTCCCTTGTATTGACACTTGGCTTCGATCTCATACTAATTGCCCCATGTGTCGTGCTCCGATTGTTCTAAACCCCACAACGGTAATCGCAACCCCAGAACCGAATCTTGTTAATTCGAGCAACACAGAGGAAACACGGATCGAGATTCTGGAAAATAGAAATGAAAATGCACAGAATAGTGTTTCTGAAGCGAGAAATGGAGATGACGAAAGAGGAAGAGAGATGGTGGTTGAGGATAGATCTGAAAGCGAGAATTTTTTTCAGGAAAGAAGAAGATCGGTGTCTCTGGACTTGTCATCTGTTGAGAAAATCAATCGTGCTCTTGCTGTTTCAATGGAATCATCATCGCCTTCGAAAAGGGTTTCCAAGGGAAGTTCGTCTTCTTTCAGGATAAGGTCTTTTCGGAGTGTTGCAGGTACTTCGATGAAGAGGACCCGATCGCACAGTATATCGTCTTTGTACAGTCGAAGTCAGAGGAAGCCAAGTGTTCCTTTGAGAAGCTTTTGA 1056 0.4706 MGLHHRKIQEEICTLVCHLKDSSFSHADGHTCVESCTNVTTPIYFPPPSPPIYIDPDLGTPSKAHQISIVLILVVSFLAVAFFAVCCYALYAGFFRKRRSSPETEEENTRGDFLDGEHGPMLDHPIWYIRTTGLQQSVISAITICKYKKGEGLIDGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVLNPTTVIATPEPNLVNSSNTEETRIEILENRNENAQNSVSEARNGDDERGREMVVEDRSESENFFQERRRSVSLDLSSVEKINRALAVSMESSSPSKRVSKGSSSSFRIRSFRSVAGTSMKRTRSHSISSLYSRSQRKPSVPLRSF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1588 351 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Bisa04g1588 351 MobiDBLite consensus disorder prediction 295 351 - -
Bisa04g1588 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 207 IPR013083 -
Bisa04g1588 351 Pfam Ring finger domain 158 201 IPR001841 -
Bisa04g1588 351 Coils Coil 223 250 - -
Bisa04g1588 351 SMART ring_2 159 200 IPR001841 -
Bisa04g1588 351 MobiDBLite consensus disorder prediction 236 257 - -
Bisa04g1588 351 SUPERFAMILY RING/U-box 153 207 - -
Bisa04g1588 351 FunFam RING-H2 finger protein ATL54 134 207 - -
Bisa04g1588 351 CDD RING-H2_EL5-like 158 201 - -
Bisa04g1588 351 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 65 208 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1588 Bisa-ChrBisa04 49629157 49630212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1588 68 206 C3H Transcription Factor Family AT1G72220 55.634 3.45e-47 163