LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa04g1576	ATGGACAATAGTAGTAGCAGAGCCGAGGCCGAACGGTGGCTCTATACCGCTAATAAGCTCCTGAGCGCACGTGATCTGCACGGGGCTAGGTCCTTCGCTGTTCGGGCACGCGAGTCTGATCCCACATTCGACGCCTCCGAGCTCCTCCTCACCGTCATCGACACGCTCCTTGCAGGCGAGAATCGGATCAACAACCTCCATGACTGGTACGGCATCCTCCAAATCCTCCCTTACACTCACAACATCGAGTACATCGCCTCCCAGTACCGCCGCCTCGCGCTTCTCTTGGACCCTAACCGGAACCCTTTCGCGTTCTCGAGCCACGCCTTCACGCTCGTCCATGACGCCTGGTCTGTGCTCTCCAACGCCCCCAAGAAGGCTATGTACGACAACGAGTTGCGATTGGTCACCGGTCCTCCTCCTGCACCTCCTCCGCCTCCAGCTCCGGCTCCAGTTCAGGCGCCAAATTCAATTCCGGCTCCAAATCCACCGCCGATGCAGCGGCAGCAGCAACAGCAGCAGATTCCGCCGAGGAAGAGCCCGAGGTCGAAAGACTGGAGGACGGTTGCTGAGGAAGAAAGGCCGAGCCCGAACGTTGTACCGGTGGAACCGATTCGACAAGGTAGGACCAGCGAGCCGGCTCGCACTGTGGCGGCAGAGACGGAAGTGGGTTCGAGCTTCTGGACTGCGTGCCCGTATTGTTATGTTATGTACGAGTACCCGAAGGCTTATGAGGACTGTACCCTTAGGTGTCAGAGCTGTAGAAGAGGGTTTCATGCGATGAGGGTGCGGACACCGCCTGTGGCGGGGAAGGATACTTATTATTGCTGTTGGGGGTTTTTCCCGTTGGGGTTTTCAGGGGATTTCAAAGATATAAGTGGGACTTCTTCCAAGTGGAACCCATTTTCTGCAATGTTTGCTTGCCCTTTGAAAGGAGGAGGAACAACAAACAACAGGAGATCTCAGAGAGGACCTTGGGTTTATTATGATGACGACGCTGCTGCTGCATTTGTTGAACTTTCTGATCCAAGTGACGATGATTCTGATGACGATGATTGGAGGGGGAGTAATAAGAAGGGAAGGAAGAGGGCAAAGAGTACCAAAGGAAAACCCTCTTCTGCTGCTAGTGGTAATGCTAGAAGGGCACCTACTGAAAGAACTAGAAGGGGGAGTCAGAGTGGTCCAGGGCATGCCAGTTTAGAAAATGGTAGGGTTGGAGACGGTGCCTCTGTAGTGCCAAATACTGCGAGAGCAGAATCGAGCAAAAAAGCTGCTTCAAATAGCTCGAGGAGACGGGGTGTGGGGAACTTGGGGAAATTAGATTTGAATGTGGAGTTTAGTAATGAGGTGGAAGAGCCACCACCCGGAATGAGGGAAGGGAATGTTGCTGGAAATGCTGAGGAGAATATTGAAGGGATTGCATTTTTTGAGGGACTTGATGAGTTCCTCAGTAGCTTACCCATTCTCAATGTTGTGGCAGATGACAAGGTTAAGGGTCACTAG	1503	0.5323	MDNSSSRAEAERWLYTANKLLSARDLHGARSFAVRARESDPTFDASELLLTVIDTLLAGENRINNLHDWYGILQILPYTHNIEYIASQYRRLALLLDPNRNPFAFSSHAFTLVHDAWSVLSNAPKKAMYDNELRLVTGPPPAPPPPPAPAPVQAPNSIPAPNPPPMQRQQQQQQIPPRKSPRSKDWRTVAEEERPSPNVVPVEPIRQGRTSEPARTVAAETEVGSSFWTACPYCYVMYEYPKAYEDCTLRCQSCRRGFHAMRVRTPPVAGKDTYYCCWGFFPLGFSGDFKDISGTSSKWNPFSAMFACPLKGGGTTNNRRSQRGPWVYYDDDAAAAFVELSDPSDDDSDDDDWRGSNKKGRKRAKSTKGKPSSAASGNARRAPTERTRRGSQSGPGHASLENGRVGDGASVVPNTARAESSKKAASNSSRRRGVGNLGKLDLNVEFSNEVEEPPPGMREGNVAGNAEENIEGIAFFEGLDEFLSSLPILNVVADDKVKGH	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa04g1576	500	MobiDBLite	consensus disorder prediction	340	440	-	-
	Bisa04g1576	500	SUPERFAMILY	Chaperone J-domain	62	134	IPR036869	-
	Bisa04g1576	500	ProSiteProfiles	dnaJ domain profile.	68	133	IPR001623	-
	Bisa04g1576	500	PANTHER	CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN	1	378	-	-
	Bisa04g1576	500	CDD	DnaJ	68	122	IPR001623	-
	Bisa04g1576	500	MobiDBLite	consensus disorder prediction	134	213	-	-
	Bisa04g1576	500	CDD	PHD_SF	231	276	-	-
	Bisa04g1576	500	SMART	dnaj_3	67	125	IPR001623	-
	Bisa04g1576	500	ProSitePatterns	Nt-dnaJ domain signature.	110	129	IPR018253	-
	Bisa04g1576	500	MobiDBLite	consensus disorder prediction	137	166	-	-
	Bisa04g1576	500	Gene3D	DnaJ domain	64	134	IPR036869	-
	Bisa04g1576	500	MobiDBLite	consensus disorder prediction	414	433	-	-
	Bisa04g1576	500	Pfam	DnaJ domain	68	130	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa04g1576	Bisa-ChrBisa04	49436398	49437900	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa04g1576	9	499	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT5G64360	40.705	6.43e-103	314