Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1536 ATGACGAGACGGAAGATAGAAATAAAGAAGATCGACAACATAACAGCGAGGCAGGTGACTTTCTCAAAGAGGAGAAGAGGACTTTTCAAGAAGGCTCATGAGCTCTCAACACTCTGTGATGCTGAGATTGCTCTCATTGTCTTCTCTACTACTGGCAAGCTCTTTCACTATGCTTCCTCAAGTATGGAGGAGCAGGTAATTCAAAGGCATGATTTGCACTCAGACACTGAAAGATCAGACCATTCATCTATTGAGTTGCAGCAACGAAGAATGGTTGGAGGCTTGAACAGAGGTCCTCGAAGCTTGGAAAAGAGGCGGCTAGAGCTTCGAACACAAAAGGCCGAGGGACATTTTTGGTTTTGGAGGTTTGGGGGCCGAAAGGTTTCAGAGGGCTAG 396 0.4621 MTRRKIEIKKIDNITARQVTFSKRRRGLFKKAHELSTLCDAEIALIVFSTTGKLFHYASSSMEEQVIQRHDLHSDTERSDHSSIELQQRRMVGGLNRGPRSLEKRRLELRTQKAEGHFWFWRFGGRKVSEG 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1536 131 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa04g1536 131 FunFam Transcription factor, MADS-box 13 83 - -
Bisa04g1536 131 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa04g1536 131 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Bisa04g1536 131 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 99 - -
Bisa04g1536 131 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Bisa04g1536 131 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa04g1536 131 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa04g1536 131 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa04g1536 131 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa04g1536 131 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa04g1536 131 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1536 Bisa-ChrBisa04 48608037 48614054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1536 1 87 MADS-box Gene Family AT2G22540 68.182 3.37e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa04g1536 SRF-TF 2.2e-25 No_clan