Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1524 ATGACGAGACAGAAGATAGAAATAAAGAAGATCGACAACATAACAGCGAGGCAGGTGACTTTCTCAAAGAGGAGAAGAGGACTTTTCAAGAAGGCTCATGAGCTCTCAACACTCTGTGATGCTGAGATTGCTCTCATTGTCTTCTCTGCTACGGGCAAGCTCTTTCACTATGCTTCCTCAAGTATGGAGCAGGTAATTCAAAGGCATGATTTGCACTCAGACACTGAAAGATCAGACCATTCATCTATTGAGTTGCAGAATGAGGGTGACACCTACAGCATGCTGCGCAAGGAAGAAGCCAGTAAGATTCAAGAACTGAGGCAGTTGAAAGGGGAAGAGCTTGAAGGATTGAATTCAAAAGAATTACAGAGACTGGAGGAACTTTTAGAAACAGGTTTGAGCCGTGTTAATAAAGCAAAGAATGAAATGATGTTGAAAGAGATCGGTGATCTCAAGAGAAAGGTCAGATACATTCTAAACTTAAACTATTAG 492 0.4146 MTRQKIEIKKIDNITARQVTFSKRRRGLFKKAHELSTLCDAEIALIVFSATGKLFHYASSSMEQVIQRHDLHSDTERSDHSSIELQNEGDTYSMLRKEEASKIQELRQLKGEELEGLNSKELQRLEELLETGLSRVNKAKNEMMLKEIGDLKRKVRYILNLNY 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1524 163 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Bisa04g1524 163 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa04g1524 163 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Bisa04g1524 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa04g1524 163 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa04g1524 163 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa04g1524 163 Pfam K-box region 85 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa04g1524 163 ProSiteProfiles K-box domain profile. 85 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa04g1524 163 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Bisa04g1524 163 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bisa04g1524 163 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa04g1524 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa04g1524 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa04g1524 163 Coils Coil 122 142 - -
Bisa04g1524 163 FunFam Transcription factor, MADS-box 13 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1524 Bisa-ChrBisa04 48337670 48342258 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1524 1 162 MADS-box Gene Family AT2G22540 55.488 1.12e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa04g1524 K-box 1.6e-13 No_clan