Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1522 ATGACGAGAAGGAAGATTCAGATAAAGAAAATAGACAGCGTAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGGAAAGGGCTTTTCAAGAAAGCCCAAGAGCTTTCAACTCTCTGTGATGCTGAAATTGCTCTCTTTGTCTTCTCTTCCACAGGGAAGCTCTTTGATTATTCTAGCTCAAGTATGCGGGAGGTAATTGAAAGATATAATCAATATTCAGCCATTCAAAGACTAAACCAATCATCTTCTGAGCAGCAGCTTGGAGGCGATGCCATTGGCTATGAGAAGCTACACAAGATAGTAGCAGAAAAGACTCATGAATTGAGGCAGTTGAAAGGAGAAGATCTTGAAGAATTTACTATTGAAGAATTGCAGAAATTAGAGGAAAAACTTGAAAGAGGCTTGATCCGAGTTTCAAAAACAAAGGATGAAAGAATTATAAAGCAGATCAGCTCACTCAAGAGAAAGGGAGTCCAACTTATGGAAGAGAATCGAAAAATGAAGCAGGTGCAAAGCCTTGCAAATGAACAAGGGCAGTCTTCTGAGTCCATCATTATGTGCAGTTCATCTGATAATCCTCCTCAAGATTGTGATAGTTCTGATACATCTCTCAGGCTGGGGTAA 624 0.4006 MTRRKIQIKKIDSVTARQVTFSKRRKGLFKKAQELSTLCDAEIALFVFSSTGKLFDYSSSSMREVIERYNQYSAIQRLNQSSSEQQLGGDAIGYEKLHKIVAEKTHELRQLKGEDLEEFTIEELQKLEEKLERGLIRVSKTKDERIIKQISSLKRKGVQLMEENRKMKQVQSLANEQGQSSESIIMCSSSDNPPQDCDSSDTSLRLG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1522 207 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Bisa04g1522 207 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa04g1522 207 MobiDBLite consensus disorder prediction 169 207 - -
Bisa04g1522 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa04g1522 207 Coils Coil 124 144 - -
Bisa04g1522 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Bisa04g1522 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa04g1522 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa04g1522 207 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bisa04g1522 207 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Bisa04g1522 207 Pfam K-box region 94 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa04g1522 207 Coils Coil 94 114 - -
Bisa04g1522 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa04g1522 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa04g1522 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa04g1522 207 FunFam Transcription factor, MADS-box 13 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1522 Bisa-ChrBisa04 48244995 48250487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1522 1 207 MADS-box Gene Family AT2G22540 50.000 1.43e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa04g1522 K-box 4.3e-14 No_clan