Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa04g1509 | ATGGGTACGATGAATCCGCAGCCACTGCGAGCACTGCCTTTCGGGGACGCAGAACCACTAGTGCAGGTTCCCATGCAGGTGGATGGCGTCGAAGGTGGATTGAATGCTCAATGTGTTAATGGACGTCGTGACGAGTTCAGTGATGGGACTAATGGTTGTGCTTTGCAGTCTCGAACCAGTGAACTCACCATTTCGTTTGAAGGCGAGGTCTACGTTTTCCCGGCGGTTACGCCAGAAAAGGTACAGGCTGTATTATTACTGTTGGGAGGGCGTGAGATACCAAGCCATGGTACTGTCCCCAGCTCCGAGTTGTTGCTGCCACAGAACTGTGAGAACATGAGGGGAATTAATGATACTTCCCGAGGTTCAAAGCTTTCACAAAGATTTGCATCCCTTGTTAGGTTCCGTGAAAAGCGGAAAGAGAGATGTTTTGAGAAGAAAATTCGGTACAGCTGCCGTAAAGAGGTTGCACAGAGGATGCATCGTAAGAATGGACAGTTTGCATCAGTGAAGGAATGTTATAGTTCTGCTGCTGAAAACTGGGACTCAGGCAATGGTGCTCCTTGTTCAGAATCTACTGATCGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGGTGGTCCCCGATCTCTCTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAACAGGAAAGGTCACTTTTGAACAAAATGAACTGGATACTTCAGCTGAGATAAAGCCTTCAACGACTAAACCAGAAAATTCTTGTCCAGTCCAGAATGAGAAGGAAAGCCCAGAGGAGACTAAGCCTATCCCAATAGATTCCAGACAATCACCCAAGAGGACGAATGACCAGTATGTGCTCGAAACTGTTGAAGCCGTTACTGACAACTTGTCCATGCAAGTGGAGAATCTTTCTGTTAATCTGCAAGAGCAGAATCCTCTTGAAGATCTTGCTGATGCATCTGGAACAGATTTTGAGATTCCTTCTGGCTTTGATGAGCAGGTTGATATTGATGATTCCAACATGAAGACGTACTGGTTATGA | 1080 | 0.4676 | MGTMNPQPLRALPFGDAEPLVQVPMQVDGVEGGLNAQCVNGRRDEFSDGTNGCALQSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGREIPSHGTVPSSELLLPQNCENMRGINDTSRGSKLSQRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASVKECYSSAAENWDSGNGAPCSESTDRRCQHCGISEKSTPAMRRGPGGPRSLCNACGLMWANKGTLRDLSKTGKVTFEQNELDTSAEIKPSTTKPENSCPVQNEKESPEETKPIPIDSRQSPKRTNDQYVLETVEAVTDNLSMQVENLSVNLQEQNPLEDLADASGTDFEIPSGFDEQVDIDDSNMKTYWL | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa04g1509 | 359 | CDD | ZnF_GATA | 196 | 239 | IPR000679 | GO:0006355|GO:0043565 | |
| Bisa04g1509 | 359 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 193 | 245 | - | - | |
| Bisa04g1509 | 359 | Pfam | tify domain | 57 | 89 | IPR010399 | - | |
| Bisa04g1509 | 359 | Pfam | CCT motif | 128 | 170 | IPR010402 | GO:0005515 | |
| Bisa04g1509 | 359 | ProSiteProfiles | Tify domain profile. | 55 | 90 | IPR010399 | - | |
| Bisa04g1509 | 359 | ProSiteProfiles | GATA-type zinc finger domain profile. | 191 | 247 | IPR000679 | GO:0006355|GO:0043565 | |
| Bisa04g1509 | 359 | SMART | tify_2 | 55 | 90 | IPR010399 | - | |
| Bisa04g1509 | 359 | ProSitePatterns | GATA-type zinc finger domain. | 197 | 224 | IPR000679 | GO:0006355|GO:0043565 | |
| Bisa04g1509 | 359 | ProSiteProfiles | CCT domain profile. | 128 | 170 | IPR010402 | GO:0005515 | |
| Bisa04g1509 | 359 | MobiDBLite | consensus disorder prediction | 248 | 294 | - | - | |
| Bisa04g1509 | 359 | Pfam | GATA zinc finger | 197 | 233 | IPR000679 | GO:0006355|GO:0043565 | |
| Bisa04g1509 | 359 | Gene3D | - | 189 | 250 | IPR013088 | GO:0006355|GO:0008270 | |
| Bisa04g1509 | 359 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 50 | 338 | IPR045280 | GO:0006355 | |
| Bisa04g1509 | 359 | MobiDBLite | consensus disorder prediction | 248 | 270 | - | - | |
| Bisa04g1509 | 359 | SMART | GATA_3 | 191 | 244 | IPR000679 | GO:0006355|GO:0043565 | |
| Bisa04g1509 | 359 | MobiDBLite | consensus disorder prediction | 271 | 285 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa04g1509 | Bisa-ChrBisa04 | 47704316 | 47709139 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa04g1509 | 61 | 240 | Tify Gene Family | AT1G51600 | 56.383 | 3.06e-61 | 197 |
Transcription factors information