Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1458 ATGGGAAGAGGGAAGATTGCGATCAGAAGGATAGACAATTCAACTAGCAGGCAAGTGACTTTCTCGAAGAGAAGGAATGGATTGCTGAAGAAAGCAAGAGAGCTTTCGATTCTGTGTGATGCAGAAGTTGGATTAATTGTCTTCTCCAGCACTGGAAAGCTCTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCAGCTTATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGAGAGAAGCAACAATGTTGAGGCAACAACTGCAGTACTTGCAAGAATGCCACAGGCAACTGATGGGTGAACAACTTTCCGGTTTGGGCATTAAAGAATTACAAAATCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTCCGGATGAAAAAGGATCAAATTTTATCCGATGAGATTAAAGAGCTACGCCAAAAGGGAAATCAAATTCATCAAGATAATGTAGAACTCTACAAACGAATAGACCTCATCCATAAAGAAAATGACGAATTACAGAAGATTTATGAAGCAAGGAGAACCAATGAAGAAAATGAGAATTCCAATCCTCCATACACTATCAGCAATGGTTATGATTTACATGCACCTATCCGTCTCCAGCTGAGCCAGCCACAGCCTCAATATAGTGAAAATCCAGCCAAAGCAATGAAACTGGGGTATCCCCTCAAACTGATGATATAA 726 0.4063 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTGKLYDYASTSMKSVIERYNKLKEEHHQLMNPASEVKFWQREATMLRQQLQYLQECHRQLMGEQLSGLGIKELQNLENQLEMSLKGVRMKKDQILSDEIKELRQKGNQIHQDNVELYKRIDLIHKENDELQKIYEARRTNEENENSNPPYTISNGYDLHAPIRLQLSQPQPQYSENPAKAMKLGYPLKLMI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1458 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa04g1458 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa04g1458 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa04g1458 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa04g1458 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa04g1458 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
Bisa04g1458 241 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bisa04g1458 241 Coils Coil 120 140 - -
Bisa04g1458 241 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bisa04g1458 241 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Bisa04g1458 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa04g1458 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa04g1458 241 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Bisa04g1458 241 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa04g1458 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1458 Bisa-ChrBisa04 46234966 46272866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1458 1 239 MADS-box Gene Family AT2G14210 63.333 2.97e-94 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa04g1458 K-box 1.4e-26 No_clan