LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa04g1366	ATGCAAAAGGCAACTTCTAATTTCACAACAATCATAGGTCATGGAGCATTTGGTTCTGTTTACAAAGTACAGATGCTCACTGGTGAGACTGTTGCTGTTAAAGTTCTTGGTGCTAATTCAAGACAAGGAGAGAAGGAATTTTTTACTGAGGTCTTGTTGCTTGGAAGATTACACCACAAACACCTTGTGGATTTGGTGGGATATACTGCAGAAAGAGGACAACATATGCTCCTTTTCATGTACATGAGCAATGGCAACCTTGCTTCTTACTTATATGATTTAAGTGAAAATACTGAGCCATTGAGCTGGGATGCAAGACTTCGCATAGCATTAGATGTAGCGAGGGGACTAGAATATCTACATTATGGGGCTGCTCCACCTGTTGTGCACCGTGACATCAAATCTTCTAACATACTGTTGGACCAGTTTATGAGAGCCAAGGTCACTGACTTTGGACTTTCTAGACCGGAGGCGATTCAGCAGGAATCCACAGCAGGGTCTAATGGAATATGTGAAACTAGTAAGTACTATGTCGGATGTGAGGCAGCCATGGAAGCTGAGGGTAAGGTTGGATGGGAAGAAATTGTGGATTCACGGCTTAATGGGAAATATGATGTGCACAAGCTCAATGAAATGGCTGCTCTTGCTTTGAAATGTGTCAATAATGCATCCAAAAACCGACCTTCAATGAGAGAAATTGTTGGAGCAGTATCTCAGCTTAATAAGAAGAAGCATGTTAGAAATGATAATATAGAGGCTCCTGCTGCAGCAGATGATTTTACCATAAACCAAGGAGTTTTCGTCAATAAAATGCTCAAATGTGTTGTGCAGATTTCATAG	840	0.4119	MQKATSNFTTIIGHGAFGSVYKVQMLTGETVAVKVLGANSRQGEKEFFTEVLLLGRLHHKHLVDLVGYTAERGQHMLLFMYMSNGNLASYLYDLSENTEPLSWDARLRIALDVARGLEYLHYGAAPPVVHRDIKSSNILLDQFMRAKVTDFGLSRPEAIQQESTAGSNGICETSKYYVGCEAAMEAEGKVGWEEIVDSRLNGKYDVHKLNEMAALALKCVNNASKNRPSMREIVGAVSQLNKKKHVRNDNIEAPAAADDFTINQGVFVNKMLKCVVQIS	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa04g1366	279	PIRSF	ILK	194	251	-	-
	Bisa04g1366	279	PIRSF	ILK	2	190	-	-
	Bisa04g1366	279	SUPERFAMILY	Protein kinase-like (PK-like)	5	235	IPR011009	-
	Bisa04g1366	279	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	128	140	IPR008271	GO:0004672\|GO:0006468
	Bisa04g1366	279	ProSitePatterns	Protein kinases ATP-binding region signature.	12	34	IPR017441	GO:0005524
	Bisa04g1366	279	Gene3D	Phosphorylase Kinase; domain 1	1	81	-	-
	Bisa04g1366	279	Gene3D	Transferase(Phosphotransferase) domain 1	183	261	-	-
	Bisa04g1366	279	Pfam	Protein tyrosine and serine/threonine kinase	8	178	IPR001245	GO:0004672\|GO:0006468
	Bisa04g1366	279	SMART	serkin_6	6	240	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa04g1366	279	ProSiteProfiles	Protein kinase domain profile.	6	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa04g1366	279	Gene3D	Transferase(Phosphotransferase) domain 1	82	182	-	-
	Bisa04g1366	279	FunFam	Os07g0541700 protein	82	171	-	-
	Bisa04g1366	279	PANTHER	OS01G0750732 PROTEIN	188	248	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa04g1366	Bisa-ChrBisa04	43153499	43157366	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa04g1366	1	240	Glycoside Hydrolase	AT3G07070	37.544	6.98e-53	176

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-2	Bisa04g1366		PK_Tyr_Ser-Thr	3e-33	CL0016