Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1348 ATGTCCACTCCAATGGTAGTCTACTATTGCATCTCTAATCAACCCGAATACCCTGAAGCTTTTCAGAACGTATCCATTCAACACCATAATTTAAGAGACACACATAATATCTTTAATGTCAAAACTTGTGTTCACTTTCAACTTCAATCCCAAACACTCAATATTCCATTACTACTTTCTTCTCATTATATATCGTGCAAACACTTTTTTCAACATGGTTCAGCTTTTCTACGAAGCAACCTTTCCCACCAATTGATTCCCGTTGAAGTGCTTGATGCATTGGTACATAGAATAATGTGGGACGCAAAACAACTCTTCGAAAATTATCATCGTTGTCGTTCATATGTTGGAGATATTTTCACTGTGTACCCCTTGGCTGTGGATGTTTTCGTTGAATTACCAGACACTGACGAGGTTGTGGCTGCGATTGAATGGATTATATTGGAATCTATGCAACAAGTCAGGATGGTTCCAGCATCCACAGAAGCCATCCAGTCACTCAATATGTTGAAGCTTCAACAAAATGATTTTGCAGATACCAATCAAAATCAGTGTTGCATATGTCTCGAAGATTTTCATGAAGGCGTGAAGGTTTCGGCAATGCCATGCCAACATATTTATCACAATGATTGTATTGTTCAGTGGCTCAAAACTAGTCATTTATGTCCCTTGTGTCGATACCCAATGCCCATTGAGAACAATTCTTAG 708 0.3856 MSTPMVVYYCISNQPEYPEAFQNVSIQHHNLRDTHNIFNVKTCVHFQLQSQTLNIPLLLSSHYISCKHFFQHGSAFLRSNLSHQLIPVEVLDALVHRIMWDAKQLFENYHRCRSYVGDIFTVYPLAVDVFVELPDTDEVVAAIEWIILESMQQVRMVPASTEAIQSLNMLKLQQNDFADTNQNQCCICLEDFHEGVKVSAMPCQHIYHNDCIVQWLKTSHLCPLCRYPMPIENNS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1348 235 SUPERFAMILY RING/U-box 165 231 - -
Bisa04g1348 235 CDD RING-H2_PA-TM-RING 184 226 - -
Bisa04g1348 235 Pfam Ring finger domain 183 226 IPR001841 -
Bisa04g1348 235 PANTHER SI:CH211-59O9.10 144 232 - -
Bisa04g1348 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 231 IPR013083 -
Bisa04g1348 235 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Bisa04g1348 235 SMART ring_2 185 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1348 Bisa-ChrBisa04 42107747 42108454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1348 148 233 C3H Transcription Factor Family AT1G18760 36.047 4.96e-16 72.8