Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1299 ATGGAGGAGGAGGAAGCTTTGCCGGACCATCTGCGGTGTAGCCGCACCGACGGCCGACAATGGCGGTGCCGCCGGAGAGTTATGGAGAATTTGAGGCTATGTGAGATTCACTACCTCCAAGGGCGACATCGGCAATACAAGGAGAAGGTTCCGGAGTCGCTGAAGCTTCAGAGGAAACGAAAAAAGGGACATAATAGTAATAATAACAATAAGAACGATTCTGTGGTTCTCGACAATGTTGAAATTAGGGCACGAAAAGTGGGCAAGATGGCGAAGCTGATGAAGAAGAGGCGGAAATTCTCGGATTCTTCAGAAGCATTGGATGCTCCGGTGAAGAAAAAGGCGTTGAAGCAAGGCGATATGCAGTTAGAGTTGATAAGGATGGTTCTGAAGAGGGAGGTTGAAAAGAGGAAGAAGAATCAGGGAGAGAAGAAGAAAAAGAAACAGGTGGATGAGGAGTTGCATTACAGCGAGGGAGAGTTGACTAGAGAATTGCCGAATGGCGTAATGGCAATCTCTCCAGCATCGACGCCCCAAGATTACAGCAATGTGGGTTCCCATTGTGATGTTAAAGTAGGAGTTGATTGTAAAGCAATTACCCCACGTTACTTCAGGTCCAAGAATGTTGAGAGGCTTCCCACTGGCAAGTTGCAGGTAGTACATTTTGGGCGAAACTTGAAGAAGTGTAAGAGGAAGAAGTGCCATTGGTGCCAGAGGAGCGATTCTTGGAATCTCATAAAGTGTTCAAGCTGTCAAAAAGAATTCTTTTGCATGGATTGCATCAAAGAACGGTATTTTGATACTCAAAGTGAAGTTAAGATGGCATGTCCTGTTTGTCGAGGAACTTGCTCCTGTAAAGACTGCTTGGCAAGTCAATGTAGAGACAGTGAAAGTAAGGAATATTTGGCTGGTAAAAGCAGAGTTGACAGAATTTTGTGTTTTCATTATGTTATCTGCATGCTTCTTCCTGTATTAAAACAAATAAATGAAGACCACAATATTGAGCTAGAAGCAGAAGCGAAAAATAAAGGGAAAAGAACCTCTGATATTCACATCAAGCAGGTTGAGTTTGGCTGCAATGAAAAGAATGACTGTAATCACTGCAAAATGCCGATTTTGGATCTTCATAGAAGCTGCTCTAGTTGTTCCTATAGCATTTGCTTAAGTTGTTGTCAAGAATTAAGTCAAGGAGGCATCTGTGGAAAAAGTAGCTTGTCTTTGTCCAAGCTTCCCAATAAAATGAAAACTGGCATTGCCAGTGAAGACCACCTTTTGGATAAGGTCATTTCTAATGGCAATTCAACTGCTATTTCACCATCTCCTGACTGGACGATTTGTAATGGTAACGGCATTGTAACTTGCCCACCCATGGAGCTTGGCGGTTGCGGTGATAGCCTCCTTGATTTGAGATGTGTTTTCCCCTTAAGTTGGATCAAAGAGATGGAAGTAAAAGCAGAAGAAATAGTTTGCTGCTATGACTTTCCTGAAACTTTGGATAAATGTTCAAGTTGCTCACTTTGTCTTGATACAGATCATAAAATTGATAAATATAAGCAGTGGCTAGAAGCAGCTCTAAGAGAAGATTCAAATGATAATTGCTTGTTTTATCCCACAGTTTTGGACATCAGTCGTGATAATTTTGAACACTTTCAGAAGCACTGGGGAAAAGGACATCCTGTAGTAGTGCGGGATGTGCTCCAAAGTAAATCAAATCACAGCTGGGATCCACTGGTCATGTTCTGTGCTTATCTTGAGACTAGCATTTCAAGATATCAGAATGATAAGGACTTACTTGAAGCTTGTTTGGACTGGTTTGAGGTGGAAATTAATATTAGGCAGTATTTTACTGGGTCTCTTAGAAGGCAGCCTCAGAAAAATACTTGGCATGAGATGCTGAAATTGAAGGGTTGGCTGTCTTCTCAATTATTCAAAGAACAGTTTCCAACTCATTTTGCTGAAGTAATAGATGCCCTACCACTAAAAGAATACATGAATCCCATGTCTGGGCTTCTGAATTTAGCTGCAAATTTGCCGGAAGGGAGTGTAAAACATGACATAGGGCCATTTGTCTATATTTCATATGGCTGTGCTGATGAACAAGCTGATTCTGTGACAAAACTCTGTTATGACTCATATGATGTGGTTAATATTATGGCACATACCACGGATGTCCCTCTCTCTACAGAGCAGCTTACAAAAATAAGGAAGTTACTGAAAAAGCACAGAACTGTGTGTCAAAGGGAGACTTCTAAATTTAGTTCTGATCAGATAAAAGGACAGAGTGTGAAAGGAAACTCATTATTGCCTGATGAAGACATGGAAGAAAAAGGATTGCAGAGTTTGGTTAGAGAAGAAAAGGACTTCTTCAGGAGAGTCAATAGAACAACTTGCATTTCTACTGGGGCAAGAAAAGCAGCTAGCCAGAGTACAGACAGCAATATGTCCCAGGATGGAGGATGTGATTCAGAGTCTGATTCTGAACCCTCTGTACTTCATGGGACCATTCAAAGCACTCAATTTTCTACGCATCATAATCATAGAGATCCCTATGAAAGCTCAAATAATGATAGAAATAAAAAATTTGTTGAGCATTCTGGTGCACAATGGGACGTATTTCGCAGACAAGATGTGCCAAAGCTTGTAGAATACCTTAAAAGACATTGTCATGAATTTTCTCATACCCAGGACTATCAAAAGCAGATGATTCATCCAATTCTAGACCAGAGCTTCTTTCTTGACAATACTCACAAAATGAGGCTTAAGGAGGAGTTTAAAATTGAACCATGGACATTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCCGCAGGATGTCCATACCAGATCAGGAATCCTAAGTGTTGTGTTCATGTGGTGCTTGAATTTGTGTCCCCTGAAAATGTTACTGAGTGCATCCAGTTGAGTGACGAAGTTCGTCTGCTTCCTAAAGGGCATAAAGCAAAAGTAGACAAGCTGGAGGCTAGGAAAATGGCCCTTTACAGCATGAGTACAGCAATAAAAGAAATACGAGACCTTACTTGCAAAACGTGA 3051 0.413 MEEEEALPDHLRCSRTDGRQWRCRRRVMENLRLCEIHYLQGRHRQYKEKVPESLKLQRKRKKGHNSNNNNKNDSVVLDNVEIRARKVGKMAKLMKKRRKFSDSSEALDAPVKKKALKQGDMQLELIRMVLKREVEKRKKNQGEKKKKKQVDEELHYSEGELTRELPNGVMAISPASTPQDYSNVGSHCDVKVGVDCKAITPRYFRSKNVERLPTGKLQVVHFGRNLKKCKRKKCHWCQRSDSWNLIKCSSCQKEFFCMDCIKERYFDTQSEVKMACPVCRGTCSCKDCLASQCRDSESKEYLAGKSRVDRILCFHYVICMLLPVLKQINEDHNIELEAEAKNKGKRTSDIHIKQVEFGCNEKNDCNHCKMPILDLHRSCSSCSYSICLSCCQELSQGGICGKSSLSLSKLPNKMKTGIASEDHLLDKVISNGNSTAISPSPDWTICNGNGIVTCPPMELGGCGDSLLDLRCVFPLSWIKEMEVKAEEIVCCYDFPETLDKCSSCSLCLDTDHKIDKYKQWLEAALREDSNDNCLFYPTVLDISRDNFEHFQKHWGKGHPVVVRDVLQSKSNHSWDPLVMFCAYLETSISRYQNDKDLLEACLDWFEVEINIRQYFTGSLRRQPQKNTWHEMLKLKGWLSSQLFKEQFPTHFAEVIDALPLKEYMNPMSGLLNLAANLPEGSVKHDIGPFVYISYGCADEQADSVTKLCYDSYDVVNIMAHTTDVPLSTEQLTKIRKLLKKHRTVCQRETSKFSSDQIKGQSVKGNSLLPDEDMEEKGLQSLVREEKDFFRRVNRTTCISTGARKAASQSTDSNMSQDGGCDSESDSEPSVLHGTIQSTQFSTHHNHRDPYESSNNDRNKKFVEHSGAQWDVFRRQDVPKLVEYLKRHCHEFSHTQDYQKQMIHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPAGCPYQIRNPKCCVHVVLEFVSPENVTECIQLSDEVRLLPKGHKAKVDKLEARKMALYSMSTAIKEIRDLTCKT 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1299 1016 MobiDBLite consensus disorder prediction 749 763 - -
Bisa04g1299 1016 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1014 IPR045109 GO:0032454|GO:0033169
Bisa04g1299 1016 ProSiteProfiles Zinc finger RING-type profile. 234 280 IPR001841 -
Bisa04g1299 1016 Pfam JmjC domain, hydroxylase 865 960 IPR003347 -
Bisa04g1299 1016 SMART cupin_9 647 979 IPR003347 -
Bisa04g1299 1016 Pfam WRC 8 49 IPR014977 -
Bisa04g1299 1016 ProSiteProfiles JmjC domain profile. 666 979 IPR003347 -
Bisa04g1299 1016 MobiDBLite consensus disorder prediction 749 772 - -
Bisa04g1299 1016 MobiDBLite consensus disorder prediction 801 843 - -
Bisa04g1299 1016 MobiDBLite consensus disorder prediction 801 858 - -
Bisa04g1299 1016 MobiDBLite consensus disorder prediction 136 157 - -
Bisa04g1299 1016 ProSiteProfiles WRC domain profile. 7 53 IPR014977 -
Bisa04g1299 1016 SUPERFAMILY Clavaminate synthase-like 545 998 - -
Bisa04g1299 1016 MobiDBLite consensus disorder prediction 47 75 - -
Bisa04g1299 1016 MobiDBLite consensus disorder prediction 844 858 - -
Bisa04g1299 1016 Gene3D Cupin 538 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1299 Bisa-ChrBisa04 40253077 40258964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1299 8 67 GRF Transcription Factor Family AT2G22840 38.333 3.04e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bisa04g1299 JmjC 4.3e-10 CL0029