Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1297 ATGGGTAGAGCACCATGCTGTGACAAGAATGGCCTCAAGAAAGGGCCATGGACACCAGAGGAAGACGAGAAACTCATCGATTATATTCAGAAACATGGCTATGGCAACTGGAGGACACTTCCAAAGAATGCAGGATTACAAAGGTGTGGAAAGAGCTGTCGTCTCCGATGGACAAACTATCTCCGGCCAGATATAAAGCGAGGTCGCTTCTCTTTTGAAGAGGAGGAGACCATAATTCAGCTTCACAGCGTTCTAGGAAACAAGTGGTCGGCCATTGCTTCTCGTTTACCTGGGAGAACAGACAACGAGATCAAAAACTACTGGAACACCCACATCAGAAAGAGGCTCCTTCGCATGGGAATTGATCCAGTGACGCACAGTCCACGGCTTGATCTCCTGGATCTCTCTTCCATTCTGACATCTCTTTTGGCCTCATCCTCCTCCCAAATGAATCATTATTACGATGACGTTCAAATTCAAAGGCTTCTTAATGGCGGCACTTACCCTCTTCAGCTAAACCCAGAGCTTCTCAAGTGGGCGTCCTCGGTACTCGTCCCAACACAAAACGACCTCAACCTCTGTAGTGCTGATCAAAATGCTCAACAACACAACCAAATCCCTTACCATGACGATGACTTCGTGACATGTGTGGATCCAAACCCTTCATTCTTCTCAAACGACGTCGTTCATGATGAGTTACCAGGATATGGTTATACTAATATTAACTATAGTTCTGAGTCTGACCATGTTGTTCCCCAGAGTCTGATCATGGACCATCCATTTATGGCTGAAACTGAAACCTCAAATTTCCAGTGTTTAAATGACAGCAATTGTCAGACTCAAAACTTCGGCTTCGCGTCAGTGCTATCGACTCCCACGCCTTCTTCAAGTCCCACATCGCTGAATTCGAATTATTCAACGTTTACGGAGGATGAGAGAGATCACAACAGCCACATATCGATGTTGAAATTTGAATTGTCCCAGATGTTTTAG 993 0.4542 MGRAPCCDKNGLKKGPWTPEEDEKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILTSLLASSSSQMNHYYDDVQIQRLLNGGTYPLQLNPELLKWASSVLVPTQNDLNLCSADQNAQQHNQIPYHDDDFVTCVDPNPSFFSNDVVHDELPGYGYTNINYSSESDHVVPQSLIMDHPFMAETETSNFQCLNDSNCQTQNFGFASVLSTPTPSSSPTSLNSNYSTFTEDERDHNSHISMLKFELSQMF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1297 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
Bisa04g1297 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bisa04g1297 330 CDD SANT 69 112 IPR001005 -
Bisa04g1297 330 CDD SANT 16 61 IPR001005 -
Bisa04g1297 330 FunFam Transcription factor MYB39 69 130 - -
Bisa04g1297 330 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Bisa04g1297 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bisa04g1297 330 FunFam MYB-related transcription factor 13 66 - -
Bisa04g1297 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Bisa04g1297 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bisa04g1297 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bisa04g1297 330 Gene3D - 69 116 - -
Bisa04g1297 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bisa04g1297 330 Gene3D - 13 66 - -
Bisa04g1297 330 SMART sant 66 114 IPR001005 -
Bisa04g1297 330 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1297 Bisa-ChrBisa04 40166280 40167756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1297 1 206 MYB Transcription Factor Family AT4G21440 70.874 1.67e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa04g1297 Myb_DNA-binding 1.4e-16 CL0123