Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1262 ATGAACGACTTAATCTCAGCCTCTTTCAAAAGATACACCAATATTGAGCAGCCCAACCAAGGTGACATAGAGTCAGGGAAGGACAACACCAATCTTGATAAGTTTTTTGAAGATGTTGAGAACGTAAAAGATGACATGAGGCAAGTTGAGATGTTATACAGAAAATTACAGGAAGCCAATGAAGAGAGTAAGATTGTCCACAACGCAAAAACTATGAAAGAACTAAGAGCCCGTATGGACAAAGATGTTGAACAAGTCCTTAAACGCGTCAAAGTCATTAAAAAAAAGCTTGAAGGCCTAGAATGTTCTAACGCATCTCACAGAAACATCCCGGGGTGTGGTCCGGGTTCGTCCGCAGATCGAACCAGGACCTCAGTGGTTAGTGGGTTGGGGAAGAAGTTAAAGGACTTGATGAATGATTTTCAAGGACTGAGAGCAAGAATGCAGGCTGAATACAAAGAAACTGTGGAAAGGAGGTATTTCACAATCACAGGAGAGAAAGCAGACGATGAGACTATAGAGAACTTGATATCAAGTGGAGAAAGTGAGAGTTTTTTACAGAGGGCAATTCAAGAACAAGGGAGGGGTCAAATAATGGACACCATATCAGAAATCCAAGAAAGGCATGATGCTGTGAAGGAAATAGAGAAGAACCTGATAGAACTTCATCAGGTGTTCTTGGATATGGCTGCACTTGTGGAGTCTCAGGGGCAACAACTTAATAACATAGAGAGCAACGTAAAGCACGCTAGTTCTTTTATCGCTAGAGGGACTGAGCAACTTGAGGATGCTAAAGAGTACCAGAGCAATTCTAGGAAGTGGACATGCATTGCTATGCTTCTTGGCATTGTCCTCATGATTATCATCTTGTTTCCTCTCTTGATGCAAGTTTTACCTCTGTTACTGCATTAG 912 0.4178 MNDLISASFKRYTNIEQPNQGDIESGKDNTNLDKFFEDVENVKDDMRQVEMLYRKLQEANEESKIVHNAKTMKELRARMDKDVEQVLKRVKVIKKKLEGLECSNASHRNIPGCGPGSSADRTRTSVVSGLGKKLKDLMNDFQGLRARMQAEYKETVERRYFTITGEKADDETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESNVKHASSFIARGTEQLEDAKEYQSNSRKWTCIAMLLGIVLMIIILFPLLMQVLPLLLH 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1262 303 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Bisa04g1262 303 SMART tSNARE_6 197 264 IPR000727 -
Bisa04g1262 303 SMART SynN_4 27 153 IPR006011 GO:0016020
Bisa04g1262 303 Pfam SNARE domain 239 290 IPR000727 -
Bisa04g1262 303 CDD SynN 32 189 IPR006011 GO:0016020
Bisa04g1262 303 CDD SNARE_syntaxin1-like 201 262 - -
Bisa04g1262 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 29 159 - -
Bisa04g1262 303 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Bisa04g1262 303 Gene3D - 32 159 - -
Bisa04g1262 303 PANTHER SYNTAXIN 53 285 IPR045242 -
Bisa04g1262 303 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bisa04g1262 303 FunFam Syntaxin 132 195 295 - -
Bisa04g1262 303 Gene3D - 193 294 - -
Bisa04g1262 303 Coils Coil 134 154 - -
Bisa04g1262 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Bisa04g1262 303 Coils Coil 39 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1262 Bisa-ChrBisa04 38895199 38896110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1262 1 301 SNARE and Associated Proteins AT1G61290 75.497 3.53e-170 472