Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1248 ATGCGAACCCAAATACCGGTCAAAAAATACCCTCCACAATTTCTGAAAATTTCTTCCCCAGTCCTTCGTTCTGTCTCTGTGGTTCTCTGCCCTCAGTCTCTCCCCGTGCCCAAACAACGCCGCAGGTCCCTCTTCCCTTCCCTCAGTGCTGCTTCCCTTCCCTCAGGTCCTTCACGCCGCAGCTCGCTCTTTCCTTCCCTCGTCAACTTTAGCATTGGTGCTCTTCCAAATTTCACCATGTATTCATCAAACCATAACCATAATCCTCTCAACCTCTCATTCAACGACACAGACACACATGATTCTTCAATTCAAGAATCCCCGCCTTCCATGAAACCCGATCACATTGACCCTAGAAAGTATCAATTAGAGGTGTTTGAAGTTGCAAAGGGGAAGAACACCATAGCAGTGTTGGATACTGGTTCTGGTAAGACCTTGATCGCTGTAATGCTTATAGAGCACGTTGGCCAAGTTATAAAGTCTACTGGTGTCAAAAAATTGATCATTTTCTTAGCTCCTACCGTGCATCTTGTCAATCAGCAATTTGAGATTGTAAAAAATCTTACGAATCTTGAAGTTGAAGAGTACTATGGTGCCAAAGGAGTTGATACATGGAATTTAAAGAGCTGGGAGAAGGAGAGCAGTGACCATGATGTAGGTATTAATTATGACACCCCAAATTCTTTTGGATGCCCTGAGAAAGGCATTCCTGCATATAGAAACAGTGTTTCATCTACAATGGATTGTAAGGGTCAAATATCAGAACTTGAAAACATCTTGGACTCTGAGTCTGATGCCTTGTTGTCAGAATTACAAATGTCAGTGCAAAGTAGCTATAAAGATATGGATGATAAATTTAAGGCCCTACATAAACGGATGTCAAATGAACTTGCAAAAGTCTTGTATTGCCTTGAAGATCTTGGACTCCTATGTGCTTATGAGGCCGTCAAAATACGTCTTGAGAATTCCACCAACATAGAGGAAGAGCATGAAGTTTACAGAAAAGCTGATACAAATCTTCTGGACGTAGAATTTGATTATGTGCAAGCAGTAAATTTGGGTTTCATATCTCCAAAATTACATGAACTTATTCAAATCTTCCTATCTTTTGGGTACGGAACTTTGGATCTGCCATACACATTGATAATGGTTTTGTGCCTTATTTTTGTTGAGAGAATCGTTGCTGCTAAGGTGATTGAAAGGTTTATAAAGAAAGTTTCCCAGTTATCCAATTTCACAGTTTCATATTTAACTGGAAGCAATACATCAAATGATTCTCTTGCACCAAAGAGGCAGAAAGAAACATTAGATTCATTTCGCTCTGGAAAGGTCAATCTATTATTTACAACTGATGTAATTGAGGAAGGAATTCATGTCCCAAACTGCTCTTCTGTGATACGTTTTGATCTACCCAAAACAGTTCGGAGTTATGTCCAATCACGGGGAAGGGCTAGGCATGCAAACTCTCAGTTTATTGTAATGTTGGAAAGGGGAAACATGAAGCAAAGAAATCAACTGTTTGACATCATTAGGAGTGAGCGTTCCATGACTGATGCATCTACTAATCGAGGCCTTGATACTGTCTGTCTAAGGACTTGTCCAGTAGAAGAAACAATTGCATACTCTGTGGAGTCTACCGGAGCATCAGTAACTTCAGATTCTAGCGTTAGTCTTATACATCATTATTGTGAAAAGCTCAAAGGAGATAAGTACTTCAATACAAAGCCAATCTTTGAGTTTTTGGATATGGAAGTTGGTTGCAAGTGCAAATTATCATTGCCTCCTAATGCGGCTTTCCAAACAATACTTGGTCCCTTAAGCAGAAACACACATTTGGCAAAACAGCTTGTATGTTTAGAAGCTTGTAAGAAGCTCCATAAAATTGGTGCTTTGGATGATCATCTTCGCCCACCAGTTAAAAAACCTCTGGAGCAGGACCATATTGTGAGAGGCAAAAAAGCAAACCCAGGAAGCACAAAAAGGAAGGAGTTGCATGGCTCAGCTGGCATTCGTGCATTATGTGGGACTTGGGAAGATAAACATGATGGAGCCATATTTCATGCCTATAAATTTGATTTCTCTTGTAATATTGTTAATGATGTTTACTCTGGATTTGTTCTTCTGATTGAGTCAAAACTTGATGATGATGTTGGAAATGTTGAAGTAGAACTTTACTTAATTTCGAAGATTGTGAAAACTACAGTCTCATCATGTGGCCAAGTGCATTTGGATGCTGACCAGATGAAGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTGTGTTTGGGCGATTGGTTCTTCGGTCCAAAGCAGCAGGAGGAAAAAGGGAATTTTTGCTTCAGAATGAGACATCATTGTTGTGGATCAAATCCAACTTATATTTGCTTCTACCACTTGAGAAATTGAGTGATACATATAAGGAATCTTTGAAAATCAATTGGAAAGGAATCAATTCTTGTGCTTCTGCCATTGAATTTTTTACAAAAAAGTATTCTCTGGGTGCTGAACATTGTGAGGATGACAGAAAAAGCTTTTCACCCGATGATGCTTGTTCATCAGAGGCAGAATGCGGTGGCACAAAAAAGATTCATTTTGCTAACTGTATGGTTGATGTTGACAACCTCAAAGATATGGTAGTTTTGGCCATCCACTCTGGAAGAATATACTGTATAATTGAAGTTGCTCATGACCTGTCTGCTGAAAGTCCTTTTGATGGAACCAATGAGAAATTGGGTGCAACAGAAATTATAACCTTCTCTGATTATTACAGTAAAAGATATGGGATTACACTGAAACATCCCGGCCAACCTTTGCTGCATTTGAGGCAAAGCCATAATCCACATAACCTTCTTGTGAACTTCAATGAGAGTGATACTCTGGACAAGGCATCGGAAAGTGGCCTGGTAACCCAAAAGGCAAGAGCTCATGTTCACATTCCACCTGAGCTTCTATGCACTCTTGATGTTCGAAGAGATGTGTTAAAGTCACTCTACTTACTTCCATCACTGATGCACCGGCTTGAATCTCTTATGTTAGCCAGCCAACTTAGACAAGAGATGGACGGCCAAAATAGCAAATTCAACATACCTAGTTTTTTGATTCTAGAAGCACTTACAACTGTAAGATGCTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTTGGAGATTCTGTTCTAAAGTATGCCGTGAGTTGTCATCTTTTTCTTAAATATCCAAAGAAGCACGAAGGACAATTATCTGCTAAACGCACATCAGCTGTCTGTAATTCAACCCTACATGAATTGGGAACAGATCACAAAATACAGGGATATATTCGTGACTCTGCATTTGAGCCTCGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACACACTGTTCGCTGTGAATGTGGGGTGGAAACCCTTGAAGTGCCTTTAGATGAAAAATTTCAAAGCGAAGATCCAAAAATTGTGGTGGGGAAGTTTTGTGACAAGCGTCACCGCTGGATATGTTCAAAGACTATTGCTGATTGTGTTGAAGCTCTGATGGGAGCATACTATGTAGGTGGTGGACTTGTCGCTTCACTTCATGTGATGAAATGGCTTGGAATAGATTCTGATCTTGAGCCATCCTTAGTTGATGAAGTAATTAATGCTGCATCTCTTCACATATATATGCCAAAAGCAAATGAGATTGCAAGCCTTGAAACAAAGATCGGGTATGAATTTTCTGTCAAGGGACTCTTGATGGAGGCGATCACACATATGTCTGAGCAAGAACTTCGGGGTGGCTATTGTTATGAGAGGCTTGAATTTCTTGGCGACTCAGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGCCACACAGACATTGATCCTGGGGAGTTGACTGACTTGCGATCTGCTTCTGTCAATAATGAAAACTTTGCTCAAGTTGCAGTCAGACGGAATCTTCAACAGCATCTTCTGCATAGCTCAGAGTCATTACTCGGCCAAATAAATGATTATGTCAAGGTTATTTCTGAATTGAATACAAGATCACTCCCAGGTGTTAAAGGTCCCAAGGCACTTGGAGATTTAGTAGAAAGTATTGCAGGGGCTATACTAATTGACACCAAACTTAATCTTGACGAAGTTTGGAAAGTATTCAAACCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAGCTGCCTCCGTTACGTGAACTACTTGAATTATCTGACTCTCTCGGGTATTTTGTGAAAGAAAAATGTAAAAAGAAGGGAGATATGGTGCATGCAGAGCTTAGTTTACAGCTTCAAGATGTCCTGTTGGTTCGAGAGGGACGCGGCCCAAATAGGAAAACAGCAAAAGGAGAAGCTGCTTTTCATTTGTTAAAGCAACTTGAGAAGAGGGGAATTTCATACCCTATTTGTGGGACCAAGAGAAAAAGAGATAATCTTGATAATTTCAATTCATCTTCTCCAACAATCGATTTTAATATTTGCTCTGGTCTACTTGACGAGCATTCCTCAGAGTCGGTTATGCTTAAGAAGGCCAAGGTGGACGACACTAACATCCTGGCTCTCAAAGACTCTTATCCTAGGGAAGATTCTGGTTCAGACGCTCCAATTCCAGTCATTGCATCAATCAATATGAAGAAGGGAGGACCCCGGACCACCCTATTTGAAATATGCAAGAGACTGCAGTGGCCAATGCCTACATTTGACTCAACAGAGCACAAACAGAGAACTCCATTTGAATTTGGCGAAGGTTCGGAAAGAAGAACAGGACATAACTGTTTTGTGTCAACCATACACTTGTGCATACCCAACTATGGTAATATAGATTGCAAAGGAGATTCTAGACCTGATAAGAAGAGCTCGCATGACTCAGCTGCACTTGCAATGCTTTATGAGCTGCAATGTCTCGGTAAACTCAAGATTGGTGATTTCTAA 4932 0.4047 MRTQIPVKKYPPQFLKISSPVLRSVSVVLCPQSLPVPKQRRRSLFPSLSAASLPSGPSRRSSLFPSLVNFSIGALPNFTMYSSNHNHNPLNLSFNDTDTHDSSIQESPPSMKPDHIDPRKYQLEVFEVAKGKNTIAVLDTGSGKTLIAVMLIEHVGQVIKSTGVKKLIIFLAPTVHLVNQQFEIVKNLTNLEVEEYYGAKGVDTWNLKSWEKESSDHDVGINYDTPNSFGCPEKGIPAYRNSVSSTMDCKGQISELENILDSESDALLSELQMSVQSSYKDMDDKFKALHKRMSNELAKVLYCLEDLGLLCAYEAVKIRLENSTNIEEEHEVYRKADTNLLDVEFDYVQAVNLGFISPKLHELIQIFLSFGYGTLDLPYTLIMVLCLIFVERIVAAKVIERFIKKVSQLSNFTVSYLTGSNTSNDSLAPKRQKETLDSFRSGKVNLLFTTDVIEEGIHVPNCSSVIRFDLPKTVRSYVQSRGRARHANSQFIVMLERGNMKQRNQLFDIIRSERSMTDASTNRGLDTVCLRTCPVEETIAYSVESTGASVTSDSSVSLIHHYCEKLKGDKYFNTKPIFEFLDMEVGCKCKLSLPPNAAFQTILGPLSRNTHLAKQLVCLEACKKLHKIGALDDHLRPPVKKPLEQDHIVRGKKANPGSTKRKELHGSAGIRALCGTWEDKHDGAIFHAYKFDFSCNIVNDVYSGFVLLIESKLDDDVGNVEVELYLISKIVKTTVSSCGQVHLDADQMKKAKCFHELFFNGVFGRLVLRSKAAGGKREFLLQNETSLLWIKSNLYLLLPLEKLSDTYKESLKINWKGINSCASAIEFFTKKYSLGAEHCEDDRKSFSPDDACSSEAECGGTKKIHFANCMVDVDNLKDMVVLAIHSGRIYCIIEVAHDLSAESPFDGTNEKLGATEIITFSDYYSKRYGITLKHPGQPLLHLRQSHNPHNLLVNFNESDTLDKASESGLVTQKARAHVHIPPELLCTLDVRRDVLKSLYLLPSLMHRLESLMLASQLRQEMDGQNSKFNIPSFLILEALTTVRCCENFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSAKRTSAVCNSTLHELGTDHKIQGYIRDSAFEPRRWVAPGQRSIHTVRCECGVETLEVPLDEKFQSEDPKIVVGKFCDKRHRWICSKTIADCVEALMGAYYVGGGLVASLHVMKWLGIDSDLEPSLVDEVINAASLHIYMPKANEIASLETKIGYEFSVKGLLMEAITHMSEQELRGGYCYERLEFLGDSVLDLLITWHLYQSHTDIDPGELTDLRSASVNNENFAQVAVRRNLQQHLLHSSESLLGQINDYVKVISELNTRSLPGVKGPKALGDLVESIAGAILIDTKLNLDEVWKVFKPLLSPIVTPDKLELPPLRELLELSDSLGYFVKEKCKKKGDMVHAELSLQLQDVLLVREGRGPNRKTAKGEAAFHLLKQLEKRGISYPICGTKRKRDNLDNFNSSSPTIDFNICSGLLDEHSSESVMLKKAKVDDTNILALKDSYPREDSGSDAPIPVIASINMKKGGPRTTLFEICKRLQWPMPTFDSTEHKQRTPFEFGEGSERRTGHNCFVSTIHLCIPNYGNIDCKGDSRPDKKSSHDSAALAMLYELQCLGKLKIGDF 1643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1248 1643 FunFam Endoribonuclease dicer-like 1 550 646 - -
Bisa04g1248 1643 SMART PAZ_2_a_3 837 1013 IPR003100 GO:0005515
Bisa04g1248 1643 ProSiteProfiles PAZ domain profile. 875 989 IPR003100 GO:0005515
Bisa04g1248 1643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 376 525 IPR001650 -
Bisa04g1248 1643 Gene3D - 355 520 IPR027417 -
Bisa04g1248 1643 CDD SF2_C_dicer 355 495 - -
Bisa04g1248 1643 ProSitePatterns Ribonuclease III family signature. 1263 1271 IPR000999 GO:0004525|GO:0006396
Bisa04g1248 1643 Pfam DEAD/DEAH box helicase 120 198 IPR011545 GO:0003676|GO:0005524
Bisa04g1248 1643 Gene3D - 113 222 IPR027417 -
Bisa04g1248 1643 FunFam Dicer-like 104 1009 1198 - -
Bisa04g1248 1643 SUPERFAMILY RNase III domain-like 1025 1202 IPR036389 GO:0004525|GO:0006396
Bisa04g1248 1643 CDD RIBOc 1034 1197 IPR000999 GO:0004525|GO:0006396
Bisa04g1248 1643 ProSiteProfiles Ribonuclease III family domain profile. 1227 1370 IPR000999 GO:0004525|GO:0006396
Bisa04g1248 1643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 509 IPR027417 -
Bisa04g1248 1643 Gene3D paz domain 859 987 - -
Bisa04g1248 1643 SMART riboneu5 1242 1393 IPR000999 GO:0004525|GO:0006396
Bisa04g1248 1643 SMART riboneu5 1033 1206 IPR000999 GO:0004525|GO:0006396
Bisa04g1248 1643 Pfam Ribonuclease III domain 1263 1369 IPR000999 GO:0004525|GO:0006396
Bisa04g1248 1643 Pfam Ribonuclease III domain 1051 1185 IPR000999 GO:0004525|GO:0006396
Bisa04g1248 1643 SUPERFAMILY RNase III domain-like 1226 1390 IPR036389 GO:0004525|GO:0006396
Bisa04g1248 1643 MobiDBLite consensus disorder prediction 92 109 - -
Bisa04g1248 1643 Pfam Dicer dimerisation domain 555 641 - -
Bisa04g1248 1643 ProSiteProfiles Ribonuclease III family domain profile. 1017 1186 IPR000999 GO:0004525|GO:0006396
Bisa04g1248 1643 Pfam PAZ domain 874 1009 IPR003100 GO:0005515
Bisa04g1248 1643 Gene3D - 1555 1633 - -
Bisa04g1248 1643 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 555 645 IPR005034 GO:0016891
Bisa04g1248 1643 FunFam Endoribonuclease dicer-like 1 350 521 - -
Bisa04g1248 1643 CDD RIBOc 1243 1391 IPR000999 GO:0004525|GO:0006396
Bisa04g1248 1643 Pfam Helicase conserved C-terminal domain 386 485 IPR001650 -
Bisa04g1248 1643 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1439 1462 IPR014720 -
Bisa04g1248 1643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 230 IPR027417 -
Bisa04g1248 1643 MobiDBLite consensus disorder prediction 92 116 - -
Bisa04g1248 1643 PANTHER DICER-RELATED 132 1465 - -
Bisa04g1248 1643 SMART helicmild6 397 487 IPR001650 -
Bisa04g1248 1643 Gene3D Dicer dimerisation domain 550 647 IPR038248 -
Bisa04g1248 1643 SUPERFAMILY PAZ domain 873 985 IPR036085 GO:0005515
Bisa04g1248 1643 FunFam Dicer-like 104 864 986 - -
Bisa04g1248 1643 FunFam Endoribonuclease dicer-like 1 1221 1391 - -
Bisa04g1248 1643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 219 IPR014001 -
Bisa04g1248 1643 Gene3D Ribonuclease III domain 1012 1197 IPR036389 GO:0004525|GO:0006396
Bisa04g1248 1643 Gene3D Ribonuclease III domain 1219 1390 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1248 Bisa-ChrBisa04 38417455 38437566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1248 404 484 Eukaryotic Initiation Factors Gene Family AT3G19760 36.364 3.86e-06 49.3