Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1242 ATGGCTCTCACCCTTCAACTTCAACATGCATTCTCTTACTTTCTCTCTTTTTTAGCTTTCGTCTCCATTTACTTAGCCACCCCTTCCGCTTGCTTCATCCCCAGAAAGCTTCTTAATGCTTCTTACTCACCTCTCAGTTCAGATTGGTCTCCCGCAGAGGCCACTTGGTATGGAAGCCCTACCGGTGCTGGAAGTGATGGGGGTGCCTGTGGATATGGTAGTGCGGTGGAGCAACCTCCATTCTCTGCAATGATATCGGCTGGAGGCGCTTCTTTGTATGAATCAGGCAAAGGCTGTGGTTCTTGTTACGAGGTTCAGTGCACTGAAAATTCGGCGTGCTCCGGCAGCCCCGTGCGGGTAGTGATCACCGACGAGTGCCCCGGGTGTGGCTCGGCCCAGCAAGTTCACTTTGACTTGAGCGGCAGCGCCTTCGGGGCCATGGCTCTTTCGGGTCAGGCTCAGAAGCTACGGGATGCTGGCTTATTGCAGATTCAATACAGAAGAGTGGAATGCAACTACCGTGGCACGTCATTAGCTTTCCACGTGGACTCGGGTTCGAACTCCGACTATTTTGCGTGCCTAATAGAATACGAGGATGGAGACGGCGACCTTGCGAAGGTGGAAATAAAGGAAGCGCCAGAGTCTGCCACGTGGATGCCGATGCAGCAATCGTGGGGTGCCGTGTGGAAGGTGGACGCGGGGTCGCCTCTGAAAGCGCCGTTCTCCATCAGGCTCACAACAGCTGAGTCCGCCCACAGCATTGTGGCTAATAACGTCATCCCTGCGGGGTGGAAGCCTGGTCAGACTTACCGATCAGTTGTGAATTTTGAAACCTAG 837 0.54 MALTLQLQHAFSYFLSFLAFVSIYLATPSACFIPRKLLNASYSPLSSDWSPAEATWYGSPTGAGSDGGACGYGSAVEQPPFSAMISAGGASLYESGKGCGSCYEVQCTENSACSGSPVRVVITDECPGCGSAQQVHFDLSGSAFGAMALSGQAQKLRDAGLLQIQYRRVECNYRGTSLAFHVDSGSNSDYFACLIEYEDGDGDLAKVEIKEAPESATWMPMQQSWGAVWKVDAGSPLKAPFSIRLTTAESAHSIVANNVIPAGWKPGQTYRSVVNFET 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1242 278 PANTHER EXPANSIN-B3 29 276 - -
Bisa04g1242 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 272 IPR007117 -
Bisa04g1242 278 Pfam Expansin C-terminal domain 179 261 IPR007117 -
Bisa04g1242 278 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Bisa04g1242 278 PRINTS Major pollen allergen Lol pI signature 87 98 IPR005795 GO:0005576|GO:0019953
Bisa04g1242 278 PRINTS Major pollen allergen Lol pI signature 227 244 IPR005795 GO:0005576|GO:0019953
Bisa04g1242 278 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Bisa04g1242 278 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576|GO:0019953
Bisa04g1242 278 PRINTS Major pollen allergen Lol pI signature 107 117 IPR005795 GO:0005576|GO:0019953
Bisa04g1242 278 Gene3D - 173 277 IPR036749 -
Bisa04g1242 278 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Bisa04g1242 278 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Bisa04g1242 278 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Bisa04g1242 278 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Bisa04g1242 278 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Bisa04g1242 278 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Bisa04g1242 278 SUPERFAMILY Barwin-like endoglucanases 40 175 IPR036908 -
Bisa04g1242 278 CDD DPBB_EXPB_N 49 171 - -
Bisa04g1242 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 176 IPR007112 -
Bisa04g1242 278 SUPERFAMILY PHL pollen allergen 177 272 IPR036749 -
Bisa04g1242 278 Gene3D - 38 172 IPR036908 -
Bisa04g1242 278 SMART dpbb_1 85 166 IPR007112 -
Bisa04g1242 278 Pfam Lytic transglycolase 86 166 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1242 Bisa-ChrBisa04 38135212 38137252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1242 31 276 Expansin Gene Family AT1G65680 60.569 1.01e-114 329