Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa04g1233 | ATGGAAGCCTATGGTGGATACTTGGTGGATGAGAAAGCTGTCAGGGTTGAGAATGCTTTCCTTGAATTTCTTAAGAGGTTCGGCCAACAGAATGAGCCCTATTACGAAGCGGAGATTGAAGCAATGAAAGCCAATGAGTCGAACACAATGTTCATCGATTTCTCGCATGTCATCCTCTACAACGATCTTCTTCAGAAAGCCATCTCCGATGAATACTTGAGATTTGAGCCCTATTTGAAAAATGCCTGCAAGCGGTTCGTTATGGAGTTGAAGCCAACCGTCATTTCCGACGATAACCCTAACAAGGACATAAACATTGCCTTCTACAATATTCCAATCGTTAAGAGGTTAAGGGAATTAACTACGGCAGAAATTGGAAAACTAGTATCTGTGACAGGAGTGGTGACAAGGACAAGTGAGGTTCGACCTGAGCTTCTCCAGGGCACTTTCAAGTGCTTAGAATGTGGTGGAGTTGTAAAGAATGTTGAACAACAATTCAAGTATACTGAGCCAACAATCTGTCTAAATGCAACATGTTTAAAGCGAGCTAAGTGGGCATTGCTGCGGCAAGAGAGCAAATTTACTGACTGGCAAAGGGTAAGAATGCAGGAGACACCCAAAGAGATACCTGCTGGCTCTCTTCCTAGGTCATTGGATGTCATTCTACGTCATGAGATTGTGGAACAGGCCAGGGCTGGTGACACGGTAATTTTCACAGGAACTGTGGTTGTTATACCTGACATTTTGGCATTAACCTCCCCTGGAGAGAGAGCAGAATGCCGCCGGGATTCTTCTCAACGCAAGAGTTCTTCAGTCGGAAATGAAGGAGTGCAGGGCCTTAGGGCTTTGGGAGTCAGAGACCTCTCCTATCGTCTGGCTTTTATTGCCAACTCTGTTCAGATTTGTGATAGTAGAAGAGATGCAGACATCAGGAATAGAAAGAAAGATGCAGATGAAGATGATCAGCAATTTACAGCACAGGAGCTGGATGAAGTTCAAAGAATGAGGAACACTCCAGATTTCCTTAACAAACTTGTTGACAGCATTGCTCCAACTGTCTTTGGTCACCAAGATATAAAGCGAGCAATCCTTCTTATGCTCATGGGTGGAGTCCACAAGTTTACTCATGAAGGCATAAATCTCAGAGGAGACATTAATGTTTGTATAGTTGGGGACCCCAGTTGTGCCAAGTCTCAATTTCTCAAATATACTTCAGGCATAGTTCCAAGATCTGTCTATACATCTGGAAAATCATCCTCTGCTGCTGGCTTGACAGCAACTGTTGCTAAGGAACCTGAAACAGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGATATCAGAGATCAGGTTGCAATTCATGAGGCCATGGAGCAGCAGACCATTAGTATCACAAAAGCAGGAATACAAGCCACTCTTAATGCTCGTACTTCCATTCTTGCTGCTGCCAACCCTACTGGGGGACGATATGATAAGTCTAAACCGCTTAAGTATAACGTGGCTCTTCCACCAGCTATTCTTTCAAGGTTTGATCTAGTATATGTTATGATTGATGACCCAGATGATCAGACAGATTACCACATAGCCCATCACATTGTGAGAGTTCATCAAAAGCGTGAAGATGCTCTTACTCCAGCATTCAGTACAGCAGAACTGAAGCGTTATATAGCTTATGCAAAAACTCTCAAACCAAAGCTTACTCTAGATGCCAGAAAGCTATTGGTAGACTCTTATGTTGCTCTTCGTAGAGGTGATACAAACCCTGGTAGTAGGGTGGCATATCGCATGACTGTTAGGCAGTTAGAGGCATTAATCAGGCTGTCCGAGGCCATTGCACGGTGCCATTTGGAAAATCAGGTACAAGCTCGTCATGTTCGACTAGCAGTAAGACTGCTGAAAACATCCATTATAAGTGTGGAGTCCAGTGAGATTGATCTATCTGAATTTCAAGAAGAAAACCGAGGTGACAGGTCCAGTGGTGATGATAAACCTGATAGCGCTACAGATGCTGATGGTCAAGTGGGAAACACTACGGATCAGAAAGCTGCTGGAACTAATGAACATGCAGCAGATGATGGTACTATCCCACAAGGGAAGAAACTTGTTATTAGTGATGAATATTTTCAGAGAGTTACCCAGGCCCTTGTTATGCGCCTTAGACAGCATGAAGAATCTGTTGCGCAAGAAGGAACTGGTTTGGCTGGAATGAGGCAACGAGATTTGATCCAATGGTATGTGAGCCAGCAAAATGAGAAAAATAATTACAGTTCGATGAAGGAGGCAGCAGCAGAAGTTTCCAAAATTAAAGCTATTATAGAGAGTTTGATTCAAAGGGAGGGCCATTTGATAGTGGTAGATGATGGTAGGCAAGCAGCAGCAGAGGCTGAAGGTGCAGAGCAGTCAACGTCCATATCTAGAAATGACCGAATCTTGGCTGTGGCTCCTAATTATGTGGTTGATTGA | 2508 | 0.4378 | MEAYGGYLVDEKAVRVENAFLEFLKRFGQQNEPYYEAEIEAMKANESNTMFIDFSHVILYNDLLQKAISDEYLRFEPYLKNACKRFVMELKPTVISDDNPNKDINIAFYNIPIVKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGGVVKNVEQQFKYTEPTICLNATCLKRAKWALLRQESKFTDWQRVRMQETPKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDILALTSPGERAECRRDSSQRKSSSVGNEGVQGLRALGVRDLSYRLAFIANSVQICDSRRDADIRNRKKDADEDDQQFTAQELDEVQRMRNTPDFLNKLVDSIAPTVFGHQDIKRAILLMLMGGVHKFTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREDALTPAFSTAELKRYIAYAKTLKPKLTLDARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLENQVQARHVRLAVRLLKTSIISVESSEIDLSEFQEENRGDRSSGDDKPDSATDADGQVGNTTDQKAAGTNEHAADDGTIPQGKKLVISDEYFQRVTQALVMRLRQHEESVAQEGTGLAGMRQRDLIQWYVSQQNEKNNYSSMKEAAAEVSKIKAIIESLIQREGHLIVVDDGRQAAAEAEGAEQSTSISRNDRILAVAPNYVVD | 835 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa04g1233 | 835 | MobiDBLite | consensus disorder prediction | 685 | 699 | - | - | |
| Bisa04g1233 | 835 | FunFam | DNA helicase | 326 | 656 | - | - | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 470 | 483 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 521 | 529 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 382 | 397 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 442 | 456 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 494 | 506 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bisa04g1233 | 835 | ProSitePatterns | MCM family signature. | 450 | 458 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Bisa04g1233 | 835 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 351 | 652 | IPR027417 | - | |
| Bisa04g1233 | 835 | Pfam | MCM AAA-lid domain | 566 | 651 | IPR041562 | - | |
| Bisa04g1233 | 835 | FunFam | DNA helicase | 712 | 835 | - | - | |
| Bisa04g1233 | 835 | Gene3D | - | 712 | 835 | - | - | |
| Bisa04g1233 | 835 | SMART | mcm | 113 | 652 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Bisa04g1233 | 835 | Pfam | MCM N-terminal domain | 18 | 110 | IPR027925 | - | |
| Bisa04g1233 | 835 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 11 | 780 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Bisa04g1233 | 835 | Pfam | MCM OB domain | 117 | 245 | IPR033762 | - | |
| Bisa04g1233 | 835 | ProSiteProfiles | MCM family domain profile. | 341 | 547 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bisa04g1233 | 835 | MobiDBLite | consensus disorder prediction | 662 | 711 | - | - | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 72 | 84 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 114 | 126 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 164 | 181 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 276 | 297 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Bisa04g1233 | 835 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 217 | 228 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Bisa04g1233 | 835 | Coils | Coil | 773 | 793 | - | - | |
| Bisa04g1233 | 835 | Gene3D | - | 144 | 195 | - | - | |
| Bisa04g1233 | 835 | Pfam | MCM P-loop domain | 329 | 551 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bisa04g1233 | 835 | Gene3D | - | 117 | 245 | IPR012340 | - | |
| Bisa04g1233 | 835 | MobiDBLite | consensus disorder prediction | 662 | 683 | - | - | |
| Bisa04g1233 | 835 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 247 | IPR012340 | - | |
| Bisa04g1233 | 835 | Pfam | MCM6 C-terminal winged-helix domain | 714 | 834 | IPR041024 | - | |
| Bisa04g1233 | 835 | Gene3D | - | 8 | 113 | - | - | |
| Bisa04g1233 | 835 | CDD | MCM6 | 344 | 650 | - | - | |
| Bisa04g1233 | 835 | Gene3D | - | 319 | 656 | IPR027417 | - | |
| Bisa04g1233 | 835 | FunFam | DNA helicase | 144 | 195 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa04g1233 | Bisa-ChrBisa04 | 37680575 | 37686239 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa04g1233 | 1 | 835 | Core DNA Replication Machinery Family | AT5G44635 | 73.410 | 0.0 | 1293 |