Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1186 ATGCAGGGCTTGGTTCCTATGGGGGGTTTGATCGATCTCAACACTACGGAGGACGATGAAACGCCTTCGTCTGGTTCCTCTGCTTCTTCTTCGTCCTCCCACTCTGGTATTATAAACACTTCGGCTTCGGCTTCGCCTCCTTCTTCCGCTGTGTGCTTGGAGCTATGGCATGCGTGTGCGGGTCCAATGATCTCGTTGCCGAAGAAGGGAAGCATGGTTGTGTACTTCCCGCAGGGCCATTTTGAACAGCAGTTCCAGGATTTTCCGGTCGCTGCCTATAATTTGAATATCCCACCTCATGTGTTCTGTCGCGTTGTAGATGTCAAACTCCATCCAGAGGAAGGAAGCGATGAAGTGTATTGCCAGATCTCGTTGGTTGCTGAGGGCGAGCAAGGGGAGCGAAAACTGCCGGAAGGGGAACTTCATGCAGACATTGAAGAGGAGGATACTGATGCTGTGGTGAAGTCCACAACACCCCACATGTTCTGCAAGACTCTAACAGCTTCAGATACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAACCAGCAGAGACCTTCACAGGAGCTTGTGGCAAAGGATTTGCATGGCCTGGAATGGAGGTTCCGACATATTTACAGGGGTCAACCAAGGAGGCATTTGCTTACTACTGGATGGAGTGCATTCGTAAACAAGAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGTGAGGATGGAGAACTGAGATTGGGAATTCGTAGGGCTGCTCAGTTGAAAAGTGGTGGTGCATTATCAGTGTCCCCTGCCCAGCAGTTGAATGCTGGCACTCTCATGGATGTGGTTAATGCTTTATCTACAAAATGTGCCTTTAATGTGTGGTACAATCCCAGGGCTAGCTCATCAGGATTCATAATACCCCTCAACAAATTCCTAAAGAGCCTTGATCATTCATATTTAGTTGGAATGAGGTTCAGGATGCGCTTTGAAACTGAAGATGCTGCAGACAGAAGGTGCACTGGATTAATTGTTGGAATGAGTGATCTTGATCCTATTAAGTGGCCTGGATCAAAATGGAGATGTCTACTGGTTAGGTGGGATGACATAGATGCCACTAGGCATAATAGAGTTTCCCCTTGGGAAATTGAGCCATCTAGTTCTGCTCCTACTTCCAGTAACTTGATGGCAAGTAGCTTGAAGAGGAACCGGATTGGGTTGCCTGCAGAAAAGCTTGAATTTCCAATCCCAAACAGAATTGGAACATTGGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATATTGGGTGTTAATACTGGTTATGATAGTATTAATGCTCAGAGTAACCAGTTAGCTGAAACAAGGAGGCGTTATCCTGTTTCAAATTGTTCTGGAATTGTTGAAACAGGAAACAGCAAAGTCCCCCAGGTGAGTTCTGATGGTTCCAGCCATGGCATAGGCTTCAGTGAATCTTTTCGATTCCATAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATAAAAGAACCTTGTCTATTGATGAGGCTCACAGAAATGGTTGCTTTGGATTCTTTGAAGGTTGTCAATTACTGGGGTCCAGAAATGGATGGTCTACCCAGATTCAGGACAATTCTGCACATTTGCCTCCATCAGGGCAAGTTTCTTCTCCGTCTTCTGTGCTGATGTTCCAGCAAGTGGTCAGTCCAGTTTCCAACTTTGATTATATTAACAAAAGTAATCAAGAGATGGAGAGGAAGATCCACTACCAAGGTTCATATGCTTTTGATGTGAAAGATGATTCTCTTTCACTGCTGAAAGGTAGTCAAGAGTTGGTTTCCTCATGCAAAAGTAGCTGCAGACTCTTTGGTTTTTCATTAACTGAAGAAAATCCTATTGCACATAAAGAAGCAGATTCCTCTAGAATTACTTTTGAGTTAAATTCTGGACCTTCCTTTACAAGACATGTTGGAGATGAGCTTCAGCTAGGGCATGCGCTTAGGAGTAAGGCGGCTGGAAGCAGCTGTACCAAAGGTGTGGTGCAATATTGA 2091 0.4538 MQGLVPMGGLIDLNTTEDDETPSSGSSASSSSSHSGIINTSASASPPSSAVCLELWHACAGPMISLPKKGSMVVYFPQGHFEQQFQDFPVAAYNLNIPPHVFCRVVDVKLHPEEGSDEVYCQISLVAEGEQGERKLPEGELHADIEEEDTDAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGGALSVSPAQQLNAGTLMDVVNALSTKCAFNVWYNPRASSSGFIIPLNKFLKSLDHSYLVGMRFRMRFETEDAADRRCTGLIVGMSDLDPIKWPGSKWRCLLVRWDDIDATRHNRVSPWEIEPSSSAPTSSNLMASSLKRNRIGLPAEKLEFPIPNRIGTLDFGESLRFRKVLQGQEILGVNTGYDSINAQSNQLAETRRRYPVSNCSGIVETGNSKVPQVSSDGSSHGIGFSESFRFHKVLQGQEILPSQPYKRTLSIDEAHRNGCFGFFEGCQLLGSRNGWSTQIQDNSAHLPPSGQVSSPSSVLMFQQVVSPVSNFDYINKSNQEMERKIHYQGSYAFDVKDDSLSLLKGSQELVSSCKSSCRLFGFSLTEENPIAHKEADSSRITFELNSGPSFTRHVGDELQLGHALRSKAAGSSCTKGVVQY 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1186 696 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Bisa04g1186 696 Pfam Auxin response factor 289 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa04g1186 696 SUPERFAMILY DNA-binding pseudobarrel domain 154 269 IPR015300 -
Bisa04g1186 696 MobiDBLite consensus disorder prediction 16 41 - -
Bisa04g1186 696 MobiDBLite consensus disorder prediction 1 41 - -
Bisa04g1186 696 FunFam Auxin response factor 160 264 - -
Bisa04g1186 696 FunFam Auxin response factor 325 396 - -
Bisa04g1186 696 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Bisa04g1186 696 Gene3D - 160 264 IPR015300 -
Bisa04g1186 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 651 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa04g1186 696 Gene3D - 326 398 - -
Bisa04g1186 696 CDD B3_DNA 160 262 IPR003340 GO:0003677
Bisa04g1186 696 SMART B3_2 162 264 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1186 Bisa-ChrBisa04 33925199 33940509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1186 48 656 B3 DNA Binding Superfamily AT5G60450 44.795 2.90e-155 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa04g1186 B3 2.6e-22 CL0405