Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa04g1028 ATGGCTTCGGGGGCTATATTTTCGTCGCTCCGGCGGAGGAGGTCGCCGTCGTTGGAGGCCTTTCTTGCTCCGGTTGACTTTTCCGATGTTGCCCTGGTTCGAACCCTATTCTCTGTCTCCAGCGAGATTGTCTCGTGCTTCTCCGGACGTTCCTTCTTCTTTCAGCGCAAGAATTCGCGGTCGCTAATCCGAAAGGTCGAGGTTTTTCAGTTGCTTTTGGAGTATCTGAAGGATACCGGCGCGTGTCTTCCACCGACGGCGGTGCTCTGTTTCAAGGAGCTGTATTTACTACTCTACCGCTCGAAGATTCTTCTCGATCATTGCGCGCAATCTAGTAAGTTATGGCTTTTGCTTCAAAACCATTCAATTTCTGGGCATTTTCATGATTTGAACCAAGAAGTATCGACCCTCCTGGATGTATTTCCGATTGACGATGTTATATTGAGTGAGGATGTTAAAGAACAGATTGAGCTGTTGCAGGAACAGTCAAGGAGGGCTAAGTTGTTCATAGACAAGAATGATGATGAGCTAAGGATTCGCTTCTTTTCATTTCTTGATGACTTTGAAAATGGAAAAATTCCTGATTCATCAGAACTAAGATCTCTCTTTGTGGAAAAATTGAAGATTCTCGATGCCAGTATTTGCAGAAGTGAAATTGAGTCTTTGGAGGAGCAGATTGTGAATCACGAGGGAGACGTTGAGCCAACAATTTCTGTGCTTAATGGGCTGGTTGCTTTGACCCGGTATTGCAGATTTTTGCTTTTCGGTTTTCAGGAAGATGAGCTAAATTTAAGAAGTGGAAATCAGAAAAAACCCAAAAGGGGATTGCTTAGTCAAGAGATTGCTGAAACTTTTATAACAATTCCAAAGGATTTTTGCTGCCCAATATCATTGGATTTGATGCGAGACCCAGTAATAATCTCTACAGGACAGACTTATGAGCGGAGCTCCATATCCAGGTGGATAGAAGAAGGCCATTGCACTTGCCCAAAGACTGGACAAATGCTTGCTAACACCCGCCTGGTTCCTAATCGATCTTTGAGGAGTTTGATCATGCAATGGTGTACTGCACATGGAATCCCCTATGACACACCAGAGATGATGGATCCTTCGCTTGAAATTTTTGCATCGACTTCTCCTACCAAAGCTGCTCTTGAAGCCAACCGGGCAACAGCAACACTTCTCATTGAGCAGCTTGCAGATGGGTCACAGGCTGCAAAGACCGTAGCTGCTCGGGAAATAAGATTGCTGGCAAAAACTGGCAAAGAAAATCGTGCTTTCATTGCAGAAGCTGGGGCAATTCCCCATCTTCGAAAGTTACTTTCATCTCTTAATGCTGTTGCTCAGGAGAATTCCGTGACTGCATTGCTCAATTTGTCCATTTATGACAAAAACAAAAGTAGAATTATGAATGAGGAAGGGTGTCTGGGATCGATAGTTGATGTTTTGAGATTTGGACACACAACCGAGGCAAGGGAAAATGCTGCAGCAACATTGTTCAGTCTTTCTGCAGTCCATGACTATAAGAAGAGAATTGCGGATAAGATGGGAGCTGTTGAAGCCCTGGCAGATTTGTTGCAAGAGGGAACCCCGAGAGGTAAAAAGGATGCTGTAACAGCTTTATTTAATCTTTCCACCCACTCCGAGAATTGTGTTAGAATGATCGAGGCAGGGGCTGTAGCAGCTCTAGTAGTGGCTTTGGGAAATGAAGGAGTTGCCGAGGAAGCAGCTGGTTCCTTGGCCTTGATCGTTCGGCAGCCAACTGGGGCCAAGGCTGTGGTTAGGGAGGAAGCAGCAGTAGCTGGATTGATTGGAATGATGCGCTGTGGGACACCAAGAGGTAAAGAGAATGCAGTTGCAGCCTTGCTTGAGTTGTGCCGGAGCGGTGGGGCAGCTGCAACAGAAAGGGTGATTAGGGCCCCGGCTTTGGCTGGATTACTTCAAACCCTACTTTTTACCGGGACAAAGCGTGCAAGAAGAAAAGCAGCTTCACTGGCTAGAGTTTTTCAGAGATGTGAAAATGCAGCTCTACATTATGGTGGTTTAGGTGTTGGCTATGCATTTGCTAGCAATTCAGCTACAGATAGGGATACAAGCTTTGCTGGCGATGTCTCGGTACCAATGTCCATTTCTGTACCTGTTGTGTAG 2148 0.4581 MASGAIFSSLRRRRSPSLEAFLAPVDFSDVALVRTLFSVSSEIVSCFSGRSFFFQRKNSRSLIRKVEVFQLLLEYLKDTGACLPPTAVLCFKELYLLLYRSKILLDHCAQSSKLWLLLQNHSISGHFHDLNQEVSTLLDVFPIDDVILSEDVKEQIELLQEQSRRAKLFIDKNDDELRIRFFSFLDDFENGKIPDSSELRSLFVEKLKILDASICRSEIESLEEQIVNHEGDVEPTISVLNGLVALTRYCRFLLFGFQEDELNLRSGNQKKPKRGLLSQEIAETFITIPKDFCCPISLDLMRDPVIISTGQTYERSSISRWIEEGHCTCPKTGQMLANTRLVPNRSLRSLIMQWCTAHGIPYDTPEMMDPSLEIFASTSPTKAALEANRATATLLIEQLADGSQAAKTVAAREIRLLAKTGKENRAFIAEAGAIPHLRKLLSSLNAVAQENSVTALLNLSIYDKNKSRIMNEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKRIADKMGAVEALADLLQEGTPRGKKDAVTALFNLSTHSENCVRMIEAGAVAALVVALGNEGVAEEAAGSLALIVRQPTGAKAVVREEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVIRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENAALHYGGLGVGYAFASNSATDRDTSFAGDVSVPMSISVPVV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa04g1028 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Bisa04g1028 715 PANTHER U BOX DOMAIN-CONTAINING 60 672 - -
Bisa04g1028 715 Gene3D - 373 550 IPR011989 -
Bisa04g1028 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Bisa04g1028 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Bisa04g1028 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 363 IPR013083 -
Bisa04g1028 715 SUPERFAMILY ARM repeat 393 670 IPR016024 -
Bisa04g1028 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Bisa04g1028 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Bisa04g1028 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Bisa04g1028 715 Gene3D - 554 671 IPR011989 -
Bisa04g1028 715 Coils Coil 212 232 - -
Bisa04g1028 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Bisa04g1028 715 SUPERFAMILY RING/U-box 276 362 - -
Bisa04g1028 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Bisa04g1028 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Bisa04g1028 715 SMART arm_5 506 546 IPR000225 GO:0005515
Bisa04g1028 715 SMART arm_5 587 627 IPR000225 GO:0005515
Bisa04g1028 715 SMART arm_5 421 461 IPR000225 GO:0005515
Bisa04g1028 715 SMART arm_5 547 585 IPR000225 GO:0005515
Bisa04g1028 715 SMART arm_5 463 504 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa04g1028 Bisa-ChrBisa04 25446830 25448977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa04g1028 1 714 U-box Gene Family AT1G29340 70.999 0.0 971